Structure of PDB 7dnp Chain A Binding Site BS01

Receptor Information
>7dnp Chain A (length=174) Species: 262698 (Brucella abortus bv. 1 str. 9-941) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKGTFAKAMPHVFSDEGGYVDHPKDPGGATNMGITLATLSAWEGRKVSKA
EVKALTKTKATDIYRENYWNKVAGDDLPAGVDHATLDFAIHSGPARAVKM
LQKVVGVDQDGVIGAKTLAAVRKMAADRIINELCDARLAWLKGLGTFSTF
GKGWTSRVSRVRSRALAFSRDSAL
Ligand information
Ligand IDH9U
InChIInChI=1S/C27H44N4O17/c1-9(23(40)31-13(25(42)43)5-6-16(36)37)28-24(41)10(2)45-22-18(30-12(4)35)26(44)46-15(8-33)21(22)48-27-17(29-11(3)34)20(39)19(38)14(7-32)47-27/h9-10,13-15,17-22,26-27,32-33,38-39,44H,5-8H2,1-4H3,(H,28,41)(H,29,34)(H,30,35)(H,31,40)(H,36,37)(H,42,43)/t9-,10+,13+,14+,15+,17+,18+,19+,20+,21+,22+,26-,27-/m0/s1
InChIKeyZIRNZNIZUAXLNB-XNKNRSQBSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH](NC(=O)[CH](C)O[CH]1[CH](NC(C)=O)[CH](O)O[CH](CO)[CH]1O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2NC(C)=O)C(=O)N[CH](CCC(O)=O)C(O)=O
OpenEye OEToolkits 2.0.7CC(C(=O)NC(CCC(=O)O)C(=O)O)NC(=O)C(C)OC1C(C(OC(C1OC2C(C(C(C(O2)CO)O)O)NC(=O)C)CO)O)NC(=O)C
OpenEye OEToolkits 2.0.7C[C@@H](C(=O)N[C@H](CCC(=O)O)C(=O)O)NC(=O)[C@@H](C)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)NC(=O)C)CO)O)NC(=O)C
CACTVS 3.385C[C@H](NC(=O)[C@@H](C)O[C@@H]1[C@@H](NC(C)=O)[C@@H](O)O[C@H](CO)[C@H]1O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2NC(C)=O)C(=O)N[C@H](CCC(O)=O)C(O)=O
FormulaC27 H44 N4 O17
Name(2R)-2-[[(2S)-2-[[(2R)-2-[(2R,3S,4R,5R,6S)-5-acetamido-3-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2-(hydroxymethyl)-6-oxidanyl-oxan-4-yl]oxypropanoyl]amino]propanoyl]amino]pentanedioic acid
ChEMBL
DrugBank
ZINC
PDB chain7dnp Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7dnp Structure and Function of the Autolysin SagA in the Type IV Secretion System of Brucella abortus .
Resolution2.0 Å
Binding residue
(original residue number in PDB)
G34 T36 T39 Y69 I91 H92 S93 G94 L145 F151 W155
Binding residue
(residue number reindexed from 1)
G33 T35 T38 Y68 I90 H91 S92 G93 L144 F150 W154
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links