Structure of PDB 7dex Chain A Binding Site BS01

Receptor Information
>7dex Chain A (length=460) Species: 55190 (Gentiana triflora) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVKVLEKCQVTPPSDTTDVELSLPVTFFDIPWLHLNKMQSLLFYDFPYPR
THFLDTVIPNLKASLSLTLKHYVPLSGNLLMPIKSGEMPKFQYSRDEGDS
ITLIVAESDQDFDYLKGHQLVDSNDLHGLFYVMPRVIRTMQDYKVIPLVA
VQVTVFPNRGIAVALTAHASIADAKSFVMFINAWAYINKFGKDADLLSAN
LLPSFDRSIIKDLYGLEETFWNEMQDVLEMFSRFGSKPPRFNKVRATYVL
SLAEIQKLKNKVLNLRGSEPTIRVTTFTMTCGYVWTCMVKSKDDVVSEES
SNDENELEYFSFTADCRGLLTPPCPPNYFGNCLASCVAKATHKELVGDKG
LLVAVAAIGEAIEKRLHNEKGVLADAKTWLSESNGIPSKRFLGITGSPKF
DSYGVDFGWGKPAKFDITSVDYAELIYVIQSRDFEKGVEIGVSLPKIHMD
AFAKIFEEGF
Ligand information
Ligand IDH5L
InChIInChI=1S/C30H42N7O19P3S/c1-30(2,25(43)28(44)33-8-7-20(40)32-9-10-60-21(41)6-4-16-3-5-17(38)18(39)11-16)13-53-59(50,51)56-58(48,49)52-12-19-24(55-57(45,46)47)23(42)29(54-19)37-15-36-22-26(31)34-14-35-27(22)37/h3-6,11,14-15,19,23-25,29,38-39,42-43H,7-10,12-13H2,1-2H3,(H,32,40)(H,33,44)(H,48,49)(H,50,51)(H2,31,34,35)(H2,45,46,47)/b6-4+/t19-,23-,24-,25+,29-/m1/s1
InChIKeyQHRGJMIMHCLHRG-ZSELIEHESA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)C=Cc4ccc(O)c(O)c4
OpenEye OEToolkits 2.0.7CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)C=Cc4ccc(c(c4)O)O)O
OpenEye OEToolkits 2.0.7CC(C)(COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)/C=C/c4ccc(c(c4)O)O)O
CACTVS 3.385CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)\C=C\c4ccc(O)c(O)c4
FormulaC30 H42 N7 O19 P3 S
NameS-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] (E)-3-[3,4-bis(oxidanyl)phenyl]prop-2-enethioate;
Caffeoyl-CoA
ChEMBL
DrugBank
ZINCZINC000096077672
PDB chain7dex Chain A Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7dex Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora, a structural insight into biosynthesis of a blue anthocyanin.
Resolution2.5 Å
Binding residue
(original residue number in PDB)
M43 Q44 S45 A179 F182 R278 T280 F282 T318 A319 L338 T400 G401 K404
Binding residue
(residue number reindexed from 1)
M38 Q39 S40 A174 F177 R273 T275 F277 T313 A314 L333 T395 G396 K399
Annotation score3
Enzymatic activity
Enzyme Commision number 2.3.1.153: anthocyanin 5-(6'''-hydroxycinnamoyltransferase).
Gene Ontology
Molecular Function
GO:0016746 acyltransferase activity
GO:0047183 anthocyanin 5-(6'''-hydroxycinnamoyltransferase) activity
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:7dex, PDBe:7dex, PDBj:7dex
PDBsum7dex
PubMed33743393
UniProtQ9ZWR8|ANTA_GENTR Anthocyanin 5-aromatic acyltransferase

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