Structure of PDB 7dcm Chain A Binding Site BS01

Receptor Information
>7dcm Chain A (length=182) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSHMHLLPELASHHAVSIPELLVSRDERQARQHVWLKRHPVPLVSFTVVA
PGPIKDSEVTRRIFNHGVTALRALAAKQGWQIQEQAALVSASGPEGMLSI
AAPARDLKLATIELEHSHPLGRLWDIDVLTPEGEILSRRDYSLPPRRCLL
CEQSAAVCARGKTHQLTDLLNRMEALLNDVDA
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7dcm Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7dcm Co-evolution-based prediction of metal-binding sites in proteomes by machine learning.
Resolution2.495 Å
Binding residue
(original residue number in PDB)
C145 C148 C155 H161
Binding residue
(residue number reindexed from 1)
C148 C151 C158 H164
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.61: citrate lyase holo-[acyl-carrier protein] synthase.
Gene Ontology
Molecular Function
GO:0016779 nucleotidyltransferase activity
GO:0050519 holo-citrate lyase synthase activity
Biological Process
GO:0051191 prosthetic group biosynthetic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:7dcm, PDBe:7dcm, PDBj:7dcm
PDBsum7dcm
PubMed36593274
UniProtP0A6G5|CITX_ECOLI Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase (Gene Name=citX)

[Back to BioLiP]