Structure of PDB 7dbe Chain A Binding Site BS01

Receptor Information
>7dbe Chain A (length=330) Species: 2183910 (Rhodobacter sp. 140A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NQLTILEAGLDEIICETVPGEAIQYSRYSLDRTSPLAGGCAWIEGAFVPA
AAARISIFDAGFGHSDVTYTVAHVWHGNFFRLEDHVERFLAGAEKMRIPM
PATKAEIMDLMRGCVSKSGLREAYVNVCVTRGYGRKPGTLEALESQLYVY
AIPYLWVFSPIRQIEGIDAVIAQSVRRSPANVMDPWIKNYQWGDLVRATF
EAQERGARTAFLLDSDGFVTEGPGFNVLMVKDGTVFTAARNVLPGITRRT
ALEIARDFGLQTVIGDVTPEMLRGADEIFAATTAGGVTPVVALDGAPVGA
GVPGDWTRKIRTRYWQMMDEPSDLIEPVSY
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain7dbe Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7dbe Biochemical and Structural Characterization of an (R)-Selective Transaminase in the Asymmetric Synthesis of Chiral Hydroxy Amines.
Resolution1.9 Å
Binding residue
(original residue number in PDB)		R89 K191 E224 G227 F228 N229 L246 G248 I249 T250 T286
Binding residue
(residue number reindexed from 1)		R88 K188 E221 G224 F225 N226 L243 G245 I246 T247 T283
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Nov 27 20:26:05 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7dbe', asym_id = 'A', bs = 'BS01', title = 'Biochemical and Structural Characterization of a...he Asymmetric Synthesis of Chiral Hydroxy Amines.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7dbe', asym_id='A', bs='BS01', title='Biochemical and Structural Characterization of a...he Asymmetric Synthesis of Chiral Hydroxy Amines.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824', uniprot = '', pdbid = '7dbe', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824', uniprot='', pdbid='7dbe', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>