Structure of PDB 7cy5 Chain A Binding Site BS01

Receptor Information
>7cy5 Chain A (length=862) Species: 3055,83333 [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT
GDGPDIIFWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKL
IAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQE
PYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKH
MNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQ
PSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVA
LKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASG
RQTVDAALAAAQTNAARAAAMSVALASEYQLVQNAQLPQRWSQSARKSLA
ILEATARKEATAQMEAAGGSFCGQFPVDPAFKVLSLEYSAPNPDIARAIR
RVDSVPNPPLPSHVVAIQSTAVDADLSLAMGVSLTPGRHTSYLVDARALQ
QSNSAAVAARKADGDKWGPACDEMFRGCRCVTGQEVVFYTAVKEPSLFKP
SFDGPAFRPSWGELSGKATGVVACVLQVPIGKETDIICAEYDNLVSKGQF
ATVTVNMTGNALIQNDGKAISKGYAVAHRARVTSNVYGKANDVSLQRLAE
TVWSVVEKRLSFMPAYRDLVITEQGKPFMLGATATNIISLTENQGVMLHL
DTDDGVWTIILWFHRHSGIIAGGEFVLPSLGISFQPLDFTIVVFAANTIV
HGTRPLQTTGKIIRWGSSHFLRFKDVNALAQLGAAYGVDELDAKQRDQLE
EVDAANSKDGVGAARRVASCMAAERKAAIEAQKAACVRGVVMNPCTGRMP
SLLFWQVWRKPP
Ligand information
Ligand IDFE
InChIInChI=1S/Fe/q+3
InChIKeyVTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		[Fe+3]
FormulaFe
NameFE (III) ION
ChEMBL
DrugBankDB13949
ZINC
PDB chain7cy5 Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7cy5 Molecular mechanism for vitamin C-derived C 5 -glyceryl-methylcytosine DNA modification catalyzed by algal TET homologue CMD1.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		H345 D347 H397
Binding residue
(residue number reindexed from 1)		H699 D701 H751
Annotation score4
Enzymatic activity
Enzyme Commision number 1.14.99.-
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0005515 protein binding
GO:0015144 carbohydrate transmembrane transporter activity
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
GO:0120204 methylcytosine to 5-glyceryl-methylcytosine dioxygenase activity
GO:1901982 maltose binding
Biological Process
GO:0006974 DNA damage response
GO:0008643 carbohydrate transport
GO:0010109 regulation of photosynthesis
GO:0015768 maltose transport
GO:0034219 carbohydrate transmembrane transport
GO:0034289 detection of maltose stimulus
GO:0042956 maltodextrin transmembrane transport
GO:0055085 transmembrane transport
GO:0060326 cell chemotaxis
Cellular Component
GO:0005634 nucleus
GO:0016020 membrane
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space
GO:0043190 ATP-binding cassette (ABC) transporter complex
GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
GO:1990060 maltose transport complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7cy5, PDBe:7cy5, PDBj:7cy5
PDBsum7cy5
PubMed33531488
UniProtA0A2K3D5Z7;
P0AEX9|MALE_ECOLI Maltose/maltodextrin-binding periplasmic protein (Gene Name=malE)

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