Structure of PDB 7bvg Chain A Binding Site BS01

Receptor Information
>7bvg Chain A (length=1078) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EPSRIARLIAVVAGIAGVLLCGLVPLLPVEETTATVLWPQGVGADGNVTE
LTAPLVAGAPRALDVTIPCRAVAELPADGGVVFSTNPAGGIEAGRNGMFI
RANADVVYVAFRDTVAAVAPREAVDSGACSEIHVWADVSAVGADFAGIPD
ASGTLPVDKRPQVSGVFTDLKVPAQPGLAARIDIDTRFITSPTLLKTAVM
VLGLACVIGSIVALALLDRGWRRRPPRTRGRAGLWTWITDTGVIGGLLIW
HIVGAPTSDDGYNMTIARVASEAGYTTNYYRYFGASEAPFDWYQSVLSHL
ASISTAGVWMRLPATAAAIATWLIISRCVLPRIGRRVAANRVAMLTAGAT
FLAAWLPFNNGLRPEPLIAFAVITVWMLVENSIGTRRLWPAAVAIVIAMF
SVTLAPQGLIALAPLLVGARAIGRVVTARRAGTGILASLAPLAASVAVVF
VIIFRDQTLATVAESVRIKYVVGPTIPWYQEFLRYYFLTVEDSVDGSLTR
RFAVLVLLLCLFGLIMVLLRRGRVPGAVSGPLWRLCGSTAIGLLLLILTP
TKWAIQFGAFAGLAGALGGVTAFAFARVGLHSRRNLALYVTALLFILAWA
TSGLNGWFYVGNYGVPWFDKQPVIAHYPVTTIFLVLAIVGGLLAGWLHFR
MDYAGHTEVADTGRNRALASTPLLIVATIMVVLELGSMVKATVGRYPVYT
VGSANIAALRSAGDSCAMADAVLVEADPNEGMLQPVPGQRFGEYGPLGGE
DPVGFTPNGVSDTLEPAEPVAANPGTPNSDGPVDKPNIGIGYAAGTGGGY
GPEGVNGSRVFLPFGLDPSRTPVMGSYGENKLAAKATSAWYQLPPRTPDR
PLVTVAAAGAIWYYEEDGSFNYGQSLKLQWGVHRPDGTYQALSEVQPIDI
FQQKAWRNLRFPLAWAPPEANVARIVADDPNLSEDQWFAFTPPRVPVLQT
AQQFLGSQTPVLMDIATAANFPCQRPFAERLGVAELPEYRIIPNFKQMVV
SSNQWQSAADGGPFLFIQALLRTEAIPTYLRDDWYRDWGSIERYIRVVPQ
EQAPTAAIEEGSTRVFGWSRGGPIRALP
Ligand information
Ligand IDF8L
InChIInChI=1S/C55H91O8P/c1-42(2)21-12-22-43(3)23-13-24-44(4)25-14-26-45(5)27-15-28-46(6)29-16-30-47(7)31-17-32-48(8)33-18-34-49(9)35-19-36-50(10)37-20-38-51(11)39-40-61-64(59,60)63-55-54(58)53(57)52(41-56)62-55/h21,23,25,27,29,31,33,35,37,39,52-58H,12-20,22,24,26,28,30,32,34,36,38,40-41H2,1-11H3,(H,59,60)/b43-23?,44-25?,45-27-,46-29-,47-31+,48-33-,49-35+,50-37+,51-39-/t52-,53-,54+,55+/m1/s1
InChIKeyYRIPSPRNAZBQAG-KAKITAEPSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCO[P](O)(=O)O[CH]1O[CH](CO)[CH](O)[CH]1O
OpenEye OEToolkits 2.0.7CC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCOP(=O)(O)OC1C(C(C(O1)CO)O)O)C)C)C)C)C)C)C)C)C)C
CACTVS 3.385CC(C)=CCCC(C)=CCCC(C)=CCC\C(C)=C/CC\C(C)=C/CC\C(C)=C\CC\C(C)=C/CC\C(C)=C\CC\C(C)=C\CC\C(C)=C/CO[P](O)(=O)O[C@@H]1O[C@H](CO)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 2.0.7CC(=CCCC(=CCCC(=CCC/C(=C\CC/C(=C\CC/C(=C/CC/C(=C\CC/C(=C/CC/C(=C/CC/C(=C\COP(=O)(O)O[C@H]1[C@H]([C@@H]([C@H](O1)CO)O)O)/C)/C)/C)/C)/C)/C)/C)C)C)C
FormulaC55 H91 O8 P
Name[(2Z,6E,10E,14Z,18E,22Z,26Z)-3,7,11,15,19,23,27,31,35,39-decamethyltetraconta-2,6,10,14,18,22,26,30,34,38-decaenyl] [(2S,3S,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl] hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain7bvg Chain A Residue 1101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7bvg Structures of cell wall arabinosyltransferases with the anti-tuberculosis drug ethambutol.
Resolution3.1 Å
Binding residue
(original residue number in PDB)
D261 Y264 N265 R365 P408 Y472 W555
Binding residue
(residue number reindexed from 1)
D259 Y262 N263 R363 P406 Y470 W553
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.2.-
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
GO:0052636 arabinosyltransferase activity
Biological Process
GO:0071555 cell wall organization
GO:0071766 Actinobacterium-type cell wall biogenesis
Cellular Component
GO:0005886 plasma membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7bvg, PDBe:7bvg, PDBj:7bvg
PDBsum7bvg
PubMed32327601
UniProtA0R613

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