Structure of PDB 6zpa Chain A Binding Site BS01

Receptor Information
>6zpa Chain A (length=173) Species: 260586 (Cyanophage S-2L) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LQITETYERLRASHISRWGIVQTTYPQNIAEHMWRVWLLCRDWGAAAGMP
QHTVRQACEFALVHDLAEIRTGDAPTPHKTPELKELLAGIEAQIVPEVAE
LEATMAPEARELWKFCDTAEAVLFLKVNGLGAHAYDVQHLLMEQMKRRLM
DSVLDVEVQDELMFQFERTIKKT
Ligand information
Ligand ID3D1
InChIInChI=1S/C10H13N5O3/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(17)6(2-16)18-7/h3-7,16-17H,1-2H2,(H2,11,12,13)/t5-,6+,7+/m0/s1
InChIKeyOLXZPDWKRNYJJZ-RRKCRQDMSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3CC(C(O3)CO)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO)O3
ACDLabs 10.04n2c1c(ncnc1n(c2)C3OC(C(O)C3)CO)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO)O3
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)CO)O)N
FormulaC10 H13 N5 O3
Name(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol;
2'-DEOXYADENOSINE
ChEMBLCHEMBL449329
DrugBank
ZINCZINC000001081581
PDB chain6zpa Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6zpa How cyanophage S-2L rejects adenine and incorporates 2-aminoadenine to saturate hydrogen bonding in its DNA.
Resolution0.860003 Å
Binding residue
(original residue number in PDB)
R19 W20 I22 V23 D75 A76 T78 P79 V139 L143
Binding residue
(residue number reindexed from 1)
R17 W18 I20 V21 D73 A74 T76 P77 V137 L141
Annotation score1
External links