Structure of PDB 6zfc Chain A Binding Site BS01

Receptor Information
>6zfc Chain A (length=87) Species: 339670 (Burkholderia ambifaria AMMD) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MQTAAISWGTTPSIRVYTANGNKITERCYDGSNWYTGAFNQAGDNVSATC
WLSGSAVHIRVYATSGGSTTEWCWDGDGWTRGAYTGL
Ligand information
Ligand IDQJB
InChIInChI=1S/C17H23NO6S/c1-9-14(21)15(22)16-17(23-9)24-11-4-3-10(7-12(11)25-16)8-13(20)18-5-2-6-19/h3-4,7,9,14-17,19,21-22H,2,5-6,8H2,1H3,(H,18,20)/t9-,14+,15+,16-,17-/m0/s1
InChIKeyREDZBLYPLDKUEX-SSFHUKSJSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH]1O[CH]2Oc3ccc(CC(=O)NCCCO)cc3S[CH]2[CH](O)[CH]1O
OpenEye OEToolkits 2.0.7CC1C(C(C2C(O1)Oc3ccc(cc3S2)CC(=O)NCCCO)O)O
CACTVS 3.385C[C@@H]1O[C@H]2Oc3ccc(CC(=O)NCCCO)cc3S[C@H]2[C@H](O)[C@@H]1O
OpenEye OEToolkits 2.0.7C[C@H]1[C@H]([C@H]([C@H]2[C@@H](O1)Oc3ccc(cc3S2)CC(=O)NCCCO)O)O
FormulaC17 H23 N O6 S
Name2-[(2~{S},3~{S},4~{R},4~{a}~{S},10~{a}~{S})-2-methyl-3,4-bis(oxidanyl)-3,4,4~{a},10~{a}-tetrahydro-2~{H}-pyrano[2,3-b][1,4]benzoxathiin-7-yl]-~{N}-(3-oxidanylpropyl)ethanamide
ChEMBL
DrugBank
ZINC
PDB chain6zfc Chain A Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zfc Fucosylated ubiquitin and orthogonally glycosylated mutant A28C: conceptually new ligands for Burkholderia ambifaria lectin (BambL).
Resolution1.65 Å
Binding residue
(original residue number in PDB)
R15 E26 G37 A38 W74 D77 G78
Binding residue
(residue number reindexed from 1)
R15 E26 G37 A38 W74 D77 G78
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links