Structure of PDB 6zbv Chain A Binding Site BS01

Receptor Information
>6zbv Chain A (length=539) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLIFC
GIPAFFMELSFGQFASQGCLGVWRISPMFKGVGYGMMVVSTYIGIYYNVV
ICIAFYYFFSSMTHVLPWAYCNNPWNTHDCAGVLDLTHSLQRTSPSEEYW
RLYVLKLSDDIGNFGEVRLPLLGCLGVAWLVVFLCLIRGVVYFTATFPYV
VLTILFVRGVTLEGAFDGIMYYLTPQWDKILEAKVWGDAASQAFYSLGCA
WGGLITMASYNKFHNNCYRDSVIISITNCATSVYAGFVIFSILGFMANHL
GVDVSRVADHGPGLAFVAYPEALTLLPISPLWSLLFFFMLILLGLGTQFC
LLETLVTAIVDEVGNEWILQKKTYVTLGVAVAGFLLGIPLTSQAGIYWLL
LMDNYAASFSLVVISCIMCVAIMYIYGHRNYFQDIQMMLGFPPPLFFQIC
WRFVSPAIIFFILVFTVIQYQPITYNHYQYPGWAVAIGFLMALSSVLCIP
LYAMFRLARTDGDTLLQRLKNATKPSRDWGPALLEHRTG
Ligand information
Ligand IDQET
InChIInChI=1S/C24H23F6NO6S/c1-38(33,34)17-2-3-20(36-13-23(26,27)24(28,29)30)18(10-17)22(32)31-11-14-8-19(25)21(9-15(14)12-31)37-16-4-6-35-7-5-16/h2-3,8-10,16H,4-7,11-13H2,1H3
InChIKeyFARKUFWPLXRSDR-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[S](=O)(=O)c1ccc(OCC(F)(F)C(F)(F)F)c(c1)C(=O)N2Cc3cc(F)c(OC4CCOCC4)cc3C2
OpenEye OEToolkits 2.0.7CS(=O)(=O)c1ccc(c(c1)C(=O)N2Cc3cc(c(cc3C2)F)OC4CCOCC4)OCC(C(F)(F)F)(F)F
FormulaC24 H23 F6 N O6 S
Name[5-fluoranyl-6-(oxan-4-yloxy)-1,3-dihydroisoindol-2-yl]-[5-methylsulfonyl-2-[2,2,3,3,3-pentakis(fluoranyl)propoxy]phenyl]methanone
ChEMBL
DrugBank
ZINC
PDB chain6zbv Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zbv Structural insights into the inhibition of glycine reuptake.
Resolution3.4 Å
Binding residue
(original residue number in PDB)
Y116 A117 G119 G121 S371 G373 W376 G378 L379 N386 T472 C475
Binding residue
(residue number reindexed from 1)
Y17 A18 G20 G22 S246 G248 W251 G253 L254 N261 T347 C350
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6zbv, PDBe:6zbv, PDBj:6zbv
PDBsum6zbv
PubMed33658720
UniProtP48067|SC6A9_HUMAN Sodium- and chloride-dependent glycine transporter 1 (Gene Name=SLC6A9)

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