Structure of PDB 6z2p Chain A Binding Site BS01

Receptor Information

>6z2p Chain A (length=356) Species: 349741 (Akkermansia muciniphila ATCC BAA-835) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

VTVPDALKDRIALKKTARQLNIVYFLGSDTEPVPDYERRLSELLLYLQQF
YGKEMQRHGYGARSFGLDIKSPGRVNIIEYKAKNPAAHYPYENGGGWKAA
QELDEFFKAHPDRKKSQHTLIIMPTWNDEKNGPDNPGGVPFYGMGRNCFA
LDYPAFDIKHLGQKTREGRLLTKWYGGMAAALGHGLNLPHNHQTASDGKK
YGTALMGSGNYTFGTSPTFLTPASCALLDACEVFSVTPSQQFYEGKPEVE
VGDVAISFKGDQILVSGNYKSPQTVKALNVYIQDPPYAVNQDYDAVSFSR
RLGKKSGKFSMKIDKKELEGLNNNEFRISLMFILANGLHMQKHFTFHWDA
LQDYRD

Ligand information

>6z2p Chain C (length=10) Species: 32630 (synthetic construct) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

RPYSPRPTSH

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	6z2p Structural basis of mammalian mucin processing by the human gut O-glycopeptidase OgpA from Akkermansia muciniphila.
Resolution	2.16 Å
Binding residue (original residue number in PDB)	Y167 G168 H209 L213 H215 Y236 N315 Y318
Binding residue (residue number reindexed from 1)	Y142 G143 H184 L188 H190 Y211 N290 Y293

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0046872	metal ion binding

View graph for
Molecular Function

External links

PDB	RCSB:6z2p, PDBe:6z2p, PDBj:6z2p
PDBsum	6z2p
PubMed	32973204
UniProt	B2UR60

[Back to BioLiP]