Structure of PDB 6z2d Chain A Binding Site BS01

Receptor Information
>6z2d Chain A (length=354) Species: 349741 (Akkermansia muciniphila ATCC BAA-835) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TVPDALKDRIALKKTARQLNIVYFLGSDTEPVPDYERRLSELLLYLQQFY
GKEMQRHGYGARSFGLDIKSPGRVNIIEYKAKNPAAHYPYENGGGWKAAQ
ELDEFFKAHPDRKKSQHTLIIMPTWNDEKNGPDNPGGVPFYGMGRNCFAL
DYPAFDIKHLGQKTREGRLLTKWYGGMAHELGHGLNLPHNHQTASDGKKY
GTALMGSGNYTFGTSPTFLTPASCALLDACEVFSVTPSQQFYEGKPEVEV
GDVAISFKGDQILVSGNYKSPQTVKALNVYIQDPPYAVNQDYDAVSFSRR
LGKKSGKFSMKIDKKELEGLNNNEFRISLMFILANGLHMQKHFTFHWDAL
QDYR
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6z2d Chain A Residue 407 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6z2d Structural basis of mammalian mucin processing by the human gut O-glycopeptidase OgpA from Akkermansia muciniphila.
Resolution1.899 Å
Binding residue
(original residue number in PDB)		Q308 D309 Q316 D319
Binding residue
(residue number reindexed from 1)		Q282 D283 Q290 D293
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6z2d, PDBe:6z2d, PDBj:6z2d
PDBsum6z2d
PubMed32973204
UniProtB2UR60

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