Structure of PDB 6yxa Chain A Binding Site BS01

Receptor Information
>6yxa Chain A (length=536) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ANEQVLTAEQVIDKARSYLSDEHIAFVEKAYLYAEDAHREQYRKSGEPYI
IHPIQVAGILVDLEMDPSTIAGGFLHDVVEDTDVTLDDLKEAFSEEVAML
VDGVTKLGKIKYKSQEEQQAENHRKMFVAMAQDIRVILIKLADRLHNMRT
LKHLPQEKQRRISNETLEIFAPLAHRLGISKIKWELEDTALRYLNPQQYY
RIVNLMKKKRAERELYVDEVVNEVKKRVEEVNIKADFSGRPKHIYSIYRK
MVLQNKQFNEIYDLLAVRILVNSIKDCYAVLGIIHTCWKPMPGRFKDYIA
MPKPNMYQSLHTTVIGPKGDPLEVQIRTFEMHEIAEYGVAAHWEGATFEK
KLSWFREILEFQNESTDAEEFMESLDLFSDMVYVFTPKGDVIELPSGSVP
IDFSYRIHSEIGNKTIGAKVNGKMVTLDHKLRTGDIVEILTSKHSYGPSQ
DWVKLAQTSQAKHKIRQFFKKQRREENVEKGRELVEKEIKNLDFELKDVL
TPENIQKVADKFNFSNEEDMYAAVGYNGITALQVAN
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain6yxa Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6yxa Structural Basis for Regulation of the Opposing (p)ppGpp Synthetase and Hydrolase within the Stringent Response Orchestrator Rel.
Resolution3.95 Å
Binding residue
(original residue number in PDB)		H53 H77 D78 D144
Binding residue
(residue number reindexed from 1)		H52 H76 D77 D143
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.6.5: GTP diphosphokinase.
Gene Ontology
Biological Process
GO:0015969 guanosine tetraphosphate metabolic process

View graph for
Biological Process
External links
PDB RCSB:6yxa, PDBe:6yxa, PDBj:6yxa
PDBsum6yxa
PubMed32937119
UniProtO54408|RELA_BACSU GTP pyrophosphokinase (Gene Name=relA)

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