Structure of PDB 6yov Chain A Binding Site BS01

Receptor Information
>6yov Chain A (length=95) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
VMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE
Ligand information
>6yov Chain I (length=131) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ctgcaggccgctcaattggtcgtagacagctctagcaccgcttaaacgca
cgtacgcgctgtcccccgcgttttaaccgccaaggggattactccctagt
ctccaggcctttgttatgcaaatacatcctg
Receptor-Ligand Complex Structure
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PDB6yov Mechanisms of OCT4-SOX2 motif readout on nucleosomes.
Resolution3.42 Å
Binding residue
(original residue number in PDB)		H40 Y42 R73 R84 S87 R117 V118 T119
Binding residue
(residue number reindexed from 1)		H1 Y3 R34 R45 S48 R78 V79 T80
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0045296 cadherin binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006325 chromatin organization
GO:0006334 nucleosome assembly
GO:0010467 gene expression
GO:0032200 telomere organization
GO:0040029 epigenetic regulation of gene expression
Cellular Component
GO:0000786 nucleosome
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0016020 membrane
GO:0032991 protein-containing complex
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6yov, PDBe:6yov, PDBj:6yov
PDBsum6yov
PubMed32327602
UniProtP68431|H31_HUMAN Histone H3.1 (Gene Name=H3C1)

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