Structure of PDB 6yhm Chain A Binding Site BS01

Receptor Information

>6yhm Chain A (length=293) Species: 633 (Yersinia pseudotuberculosis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MNVAEISSINFRRLNSGNINVLKGRGVFSSRRLREIYLRFDAANADELRP
GDVYVKKTKFDSMGYDSHFYNEGIGINGAPTLNTYTGEYVADSSSQGATY
WLKYNLTNETSIIKVSNSARGANGIKIALEEIEENKPVVITSGTLTGCTV
VFARKGEYFYAVHTGNSESLIGFTSTSGVAKAIEVLSSLSELEVPALPDV
INNNTLVEYLSDNFDSALISYSSSSLKPNSMINISRENVSTFSYYTDDIQ
LPSFGTSVTILVRTNDNTVVRSLSESYTMNSKMVVFNVLQKDF

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

6yhm Chain A Residue 1101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6yhm Crystal structure of bacterial cytotoxic necrotizing factor CNF Y reveals molecular building blocks for intoxication.
Resolution	1.13 Å
Binding residue (original residue number in PDB)	C866 G883 N884
Binding residue (residue number reindexed from 1)	C148 G165 N166
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:6yhm, PDBe:6yhm, PDBj:6yhm
PDBsum	6yhm
PubMed	33410511
UniProt	A0A0N9JNY6

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