Structure of PDB 6y0x Chain A Binding Site BS01

Receptor Information
>6y0x Chain A (length=89) Species: 305 (Ralstonia solanacearum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSVQTAATSWGTVPSIRVYTANNGKITERCWDGKGWYTGAFNEPGDNVSV
TSWLVGSAIHIRVYASTGTTTTEWCWDGNGWTKGAYTAT
Ligand information
Ligand IDZDC
InChIInChI=1S/C8H14O6/c1-3-6(11)8(13)7(12)4(14-3)2-5(9)10/h3-4,6-8,11-13H,2H2,1H3,(H,9,10)/t3-,4-,6+,7+,8+/m0/s1
InChIKeyYTZUDUWVQZSKNN-OASCRQMUSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(O)CC1OC(C(O)C(O)C1O)C
OpenEye OEToolkits 1.7.6CC1C(C(C(C(O1)CC(=O)O)O)O)O
CACTVS 3.370C[C@@H]1O[C@@H](CC(O)=O)[C@@H](O)[C@H](O)[C@@H]1O
CACTVS 3.370C[CH]1O[CH](CC(O)=O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)CC(=O)O)O)O)O
FormulaC8 H14 O6
Name3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid
ChEMBL
DrugBank
ZINCZINC000166514822
PDB chain6y0x Chain A Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6y0x Fucosylated antimicrobial peptide SB6 in complex with the lectin LecRSL from Ralstonia solanacearum at 2.4 Angstrom resolution
Resolution2.425 Å
Binding residue
(original residue number in PDB)		R17 E28 A40 W76 W81
Binding residue
(residue number reindexed from 1)		R17 E28 A40 W76 W81
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6y0x, PDBe:6y0x, PDBj:6y0x
PDBsum6y0x
PubMed
UniProtA0A0S4TLR1

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