Structure of PDB 6xu3 Chain A Binding Site BS01

Receptor Information
>6xu3 Chain A (length=320) Species: 2527671 (Shinella sp. JR1-6) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YTDHIFDDYRLRVKALEASDNPFAKGIAYIAGEYVPLHEARIPILDQGFL
HSDLTYDVPAVWNGRFFRLEDHLDRFEKSCAQLRLKSPLSREEIRDRLVE
MTVKSGIRDAYVMMIVTRGLRFVRQYAPEECDNFCYLMVMPYLWVMDEAT
QKNGGSAVITRTVRRVPPGAIDPTVKNLQWGDFTRGLMEARDRGAMYPIL
TDGDANLTEGSGFNVILIKDGKLYTPRKGVLEGVTRKSVLAVAEKLGYPY
TIDDVPVELAYQCDEILFVTTAGGVMPITTLDGQPVGDGQVGPISKALWK
GYWDAHADPELSFAVEDYRA
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain6xu3 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6xu3 Expanding the Toolbox of R-Selective Amine Transaminases by Identification and Characterization of New Members.
Resolution2.1 Å
Binding residue
(original residue number in PDB)		R81 K182 F189 E215 G218 F219 L237 G239 V240 T241 T277
Binding residue
(residue number reindexed from 1)		R75 K176 F183 E209 G212 F213 L231 G233 V234 T235 T271
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 00:27:09 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6xu3', asym_id = 'A', bs = 'BS01', title = 'Expanding the Toolbox of R-Selective Amine Trans...entification and Characterization of New Members.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6xu3', asym_id='A', bs='BS01', title='Expanding the Toolbox of R-Selective Amine Trans...entification and Characterization of New Members.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824', uniprot = '', pdbid = '6xu3', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824', uniprot='', pdbid='6xu3', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>