Structure of PDB 6xm6 Chain A Binding Site BS01

Receptor Information
>6xm6 Chain A (length=484) Species: 627192 (Sphingobium sp. SYK-6) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AHFPDTPAFTGFNAPSRIECDIPNLVHEGTIPPELNGAFFRVQPDPQFPP
RLGDDISFNGDGMITRFHIHDGQCDIKQRWAKTNKWKLENAAGKALFGSY
RNPLTDDESVKGEYRSTANTNAFVFAGKLWAMKEDSPSLTMDPATMETFG
FEKFGGKMTGQTFTAHPKVDPLTGNMVAIGYAASGLCTDDVCLYEISPDG
ELIYEAWFKVPYYCMMHDFGVTKDYLVLHIVPSIGSWDRLEKGLPHFGFD
TTLPVYLGIIPRRADLKQEDIRWFKRENCFASHVMNAFQEGTKVHVDVPE
AENNMFPFFPDVHGAPFNPQQAMSRLTRWTVDMASNSDEFDSVTRLTETA
GEFPRIDDRMTGLPYRYGWMLEMDMKRPVELKGGFLMNCLFLKDHQTGAE
QHWWCGPTSSLQEPAFIPRSKDAPEGDGWIVQVCNRLADHKSDLLIFEAL
DIEKGPVATVHLPFALRFGLHGNWANAEEIGLAA
Ligand information
Ligand IDCO
InChIInChI=1S/Co/q+2
InChIKeyXLJKHNWPARRRJB-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Co+2]
CACTVS 3.341[Co++]
FormulaCo
NameCOBALT (II) ION
ChEMBL
DrugBankDB14205
ZINC
PDB chain6xm6 Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6xm6 Structural and functional analysis of lignostilbene dioxygenases from Sphingobium sp. SYK-6.
Resolution1.45 Å
Binding residue
(original residue number in PDB)		H167 H218 H284 H476
Binding residue
(residue number reindexed from 1)		H166 H217 H283 H471
Annotation score3
Enzymatic activity
Enzyme Commision number 1.13.11.-
Gene Ontology
Molecular Function
GO:0010436 carotenoid dioxygenase activity
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0016121 carotene catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6xm6, PDBe:6xm6, PDBj:6xm6
PDBsum6xm6
PubMed33965373
UniProtG2IQT9

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