Structure of PDB 6xiy Chain A Binding Site BS01

Receptor Information
>6xiy Chain A (length=129) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SCPVNWVEHQDSCYWFSHSGMSWAEAEKYCQLKNAHLVVINSREEQNFVQ
KYLGSAYTWMGLSDPEGAWKWVDGTDYATGFQNWKPGQPDDWQGHGLGGG
EDCAHFHPDGRWNDDVCQRPYHWVCEAGL
Ligand information
Ligand IDQ3M
InChIInChI=1S/C10H19NO4S/c1-5(13)11-8-7(16-2)3-6(4-12)9(14)10(8)15/h6-10,12,14-15H,3-4H2,1-2H3,(H,11,13)/t6-,7+,8+,9+,10-/m1/s1
InChIKeyZYKRTEHWXBHGOU-SQQIUAQRSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01CSC1CC(CO)C(O)C(O)C1NC(C)=O
OpenEye OEToolkits 2.0.7CC(=O)N[C@H]1[C@H](C[C@@H]([C@@H]([C@@H]1O)O)CO)SC
OpenEye OEToolkits 2.0.7CC(=O)NC1C(CC(C(C1O)O)CO)SC
CACTVS 3.385CS[CH]1C[CH](CO)[CH](O)[CH](O)[CH]1NC(C)=O
CACTVS 3.385CS[C@H]1C[C@H](CO)[C@H](O)[C@H](O)[C@H]1NC(C)=O
FormulaC10 H19 N O4 S
NameMethyl 2-(acetylamino)-2-deoxy-1-thio-alpha-D-galactopyranose;
N-[(1R,2R,3S,4R,6S)-2,3-dihydroxy-4-(hydroxymethyl)-6-(methylsulfanyl)cyclohexyl]acetamide
ChEMBL
DrugBank
ZINC
PDB chain6xiy Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6xiy Crystal Structure of the Carbohydrate Recognition Domain of the Human Macrophage Galactose C-Type Lectin Bound to GalNAc and the Tumor-Associated Tn Antigen.
Resolution2.307 Å
Binding residue
(original residue number in PDB)
Y236 Q267 D269 W271 E280 H286 N292
Binding residue
(residue number reindexed from 1)
Y57 Q88 D90 W92 E101 H107 N113
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:6xiy, PDBe:6xiy, PDBj:6xiy
PDBsum6xiy
PubMed33724805
UniProtQ8IUN9|CLC10_HUMAN C-type lectin domain family 10 member A (Gene Name=CLEC10A)

[Back to BioLiP]