Structure of PDB 6wyy Chain A Binding Site BS01

Receptor Information
>6wyy Chain A (length=315) Species: 160488 (Pseudomonas putida KT2440) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KLANVVILATGGTIAGLGVDKLIAGVPELADIANVRGEQVMQIASESISN
DDLLKLGKRVAELAESKDVDGIVITHGTDTLEETAFFLNLVEKTDKPIVV
VGSMRPGTAMSADGMLNLYNAVAVASDKQSRGKGVLVTMNDEIQSGRDVS
KAVNIKTEAFKSAWGPMGMVVEGKSYWFRLPAKRHTVNSEFDIKQISSLP
QVDIAYGYGNVTDTAYKALAQNGAKALIHAGTGNGSVSSRVVPALQELRK
NGVQIIRSSHVNQGGFVLRNAEQPDDKNDWVVAHDLNPQKARILAMVAMT
KTQDSKELQRIFWEY
Ligand information
Ligand IDGLU
InChIInChI=1S/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/t3-/m0/s1
InChIKeyWHUUTDBJXJRKMK-VKHMYHEASA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(O)C(N)CCC(=O)O
OpenEye OEToolkits 1.7.0C(CC(=O)O)C(C(=O)O)N
OpenEye OEToolkits 1.7.0C(CC(=O)O)[C@@H](C(=O)O)N
CACTVS 3.370N[C@@H](CCC(O)=O)C(O)=O
CACTVS 3.370N[CH](CCC(O)=O)C(O)=O
FormulaC5 H9 N O4
NameGLUTAMIC ACID
ChEMBLCHEMBL575060
DrugBankDB00142
ZINCZINC000001482113
PDB chain6wyy Chain A Residue 400 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6wyy Generalized enzymatic mechanism of catalysis by tetrameric L-asparaginases from mesophilic bacteria.
Resolution1.35 Å
Binding residue
(original residue number in PDB)		G19 T20 S67 E68 G99 T100 D101
Binding residue
(residue number reindexed from 1)		G12 T13 S45 E46 G77 T78 D79
Annotation score5
Enzymatic activity
Catalytic site (original residue number in PDB) T20 T100 D101 K173 E294
Catalytic site (residue number reindexed from 1) T13 T78 D79 K151 E272
Enzyme Commision number 3.5.1.38: glutamin-(asparagin-)ase.
Gene Ontology
Molecular Function
GO:0004067 asparaginase activity
GO:0004359 glutaminase activity
GO:0016787 hydrolase activity
GO:0050417 glutamin-(asparagin-)ase activity
Biological Process
GO:0006520 amino acid metabolic process
GO:0006528 asparagine metabolic process
Cellular Component
GO:0042597 periplasmic space

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6wyy, PDBe:6wyy, PDBj:6wyy
PDBsum6wyy
PubMed
UniProtQ88K39|ASPQ_PSEPK Glutaminase-asparaginase (Gene Name=ansB)

[Back to BioLiP]