Structure of PDB 6vzz Chain A Binding Site BS01

Receptor Information
>6vzz Chain A (length=374) Species: 66527 (Balamuthia mandrillaris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ELSQEVTQTLKQWRVAAVSSAGLKYYVGVDIGGTNTRLALARAEDHDTFL
QVLKVKADDTRKLIAFFDSVSDSIRDLLGVEASGACLAGAGRISPDGEVL
DVTNFHGDATHRRLKRSELPSFLFPPTKTHFINDLEGTCYGVSSMNASDA
LDQCFKPLWGPASSDKVTLQPDHYLVLAVGTGLGIATLLSLRGGFQVMPM
EFGHVAISPVGPANAAYAEETRLLEYISEKLYNKEHAIEYEDIVSGRGLV
ITYKWVLDEANVQDESLRSLDAGKIAKNATNSEACPYAHKAMMLHFKFLM
RIAKNLCIGLQVRGMLLAGDNQVNNNLFLEQNLESLRAEFFDHPKKAWIE
DIDLFTQTKPVNLNLHGALYVARG
Ligand information
Ligand IDBGC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-VFUOTHLCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-glucopyranose;
beta-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL1614854
DrugBankDB02379
ZINCZINC000003833800
PDB chain6vzz Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6vzz Characterization of Glucokinases from Pathogenic Free-Living Amoebae.
Resolution2.65 Å
Binding residue
(original residue number in PDB)		A91 G92 T104 N134 D135 L184 G185 E207 H210 E247
Binding residue
(residue number reindexed from 1)		A90 G91 T103 N133 D134 L183 G184 E201 H204 E241
Annotation score5
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Dec 3 11:28:12 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6vzz', asym_id = 'A', bs = 'BS01', title = 'Characterization of Glucokinases from Pathogenic Free-Living Amoebae.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6vzz', asym_id='A', bs='BS01', title='Characterization of Glucokinases from Pathogenic Free-Living Amoebae.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004340,0005524,0005536,0006096,0051156', uniprot = '', pdbid = '6vzz', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004340,0005524,0005536,0006096,0051156', uniprot='', pdbid='6vzz', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>