Structure of PDB 6vob Chain A Binding Site BS01

Receptor Information
>6vob Chain A (length=125) Species: 1895 (Streptomyces avidinii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MGRDEAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGR
YDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWL
LTSGTTEANAWASTYVGHDTFTKVK
Ligand information
Ligand IDKM3
InChIInChI=1S/C26H36N6O2S.Fe/c33-24(12-2-1-11-23-25-22(19-35-23)30-26(34)31-25)29-15-7-8-16-32(17-20-9-3-5-13-27-20)18-21-10-4-6-14-28-21;/h3-6,9-10,13-14,22-23,25H,1-2,7-8,11-12,15-19H2,(H,29,33)(H2,30,31,34);/q;+3/t22-,23-,25-;/m0./s1
InChIKeyBLSJCACNFKSTBA-LTWAPREQSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1cc[n+]2c(c1)C[N+]3([Fe]2[n+]4ccccc4C3)CCCCNC(=O)CCCCC5C6C(CS5)NC(=O)N6
CACTVS 3.385O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)NCCCCN3Cc4cccc[n+]4[Fe][n+]5ccccc5C3
OpenEye OEToolkits 2.0.7c1cc[n+]2c(c1)C[N+]3([Fe]2[n+]4ccccc4C3)CCCCNC(=O)CCCC[C@H]5[C@@H]6[C@H](CS5)NC(=O)N6
ACDLabs 12.01O=C1NC2C(N1)C(SC2)CCCCC(NCCCC[N+]35[Fe]([n+]4ccccc4C3)[n+]6ccccc6C5)=O
CACTVS 3.385O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)NCCCCN3Cc4cccc[n+]4[Fe][n+]5ccccc5C3
FormulaC26 H36 Fe N6 O2 S
Name{N-(4-{bis[(pyridin-2-yl-kappaN)methyl]amino-kappaN}butyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide}iron(3+)
ChEMBL
DrugBank
ZINC
PDB chain6vob Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6vob Artificial Metalloproteins with Dinuclear Iron-Hydroxido Centers.
Resolution1.7 Å
Binding residue
(original residue number in PDB)
S27 Y43 S45 V47 G48 N49 W79 S88 T90 W108 S112 Y124 D128
Binding residue
(residue number reindexed from 1)
S18 Y34 S36 V38 G39 N40 W70 S79 T81 W99 S103 Y115 D119
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005576 extracellular region

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Molecular Function

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Cellular Component
External links
PDB RCSB:6vob, PDBe:6vob, PDBj:6vob
PDBsum6vob
PubMed33528256
UniProtP22629|SAV_STRAV Streptavidin

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