Structure of PDB 6vmw Chain A Binding Site BS01

Receptor Information
>6vmw Chain A (length=764) Species: 1365250 (Pseudoalteromonas luteoviolacea DSM 6061) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QYKIYPPLGIARVGNGPAIKPLSLSTPEVPWAHLYDTNVQYLVTQQELEQ
LLEEAFGGNVINEISQITITGLLGLSHLVPQQQLSRSLDNDIVQQIKGAL
LKVLSDHYLHAVKKQAQNFYIYKCDNPVEKLKLTDGDKVTWRVEVANKKS
FWYDYNNALDLSLHTQGSGNLSKNVSKHRLAPAMTAKRRNPNVITNSLRK
QLVISSQGSVSSDNNTQVPLRGKFPARHNVLQGSIECDNEGVLRFYAGNG
ISQALSPSSLNTDAADNSNWFDDICDGRVTAVVELKNGDTFEIQDEQSSA
WVATTPPDYAPQIEPIVTMYDMVSGAALKEQDLDNLTTQFSDVFPILYRL
YRMQWVNQADFTDNAVNTQIRELNSELGFAQLLDNSASAKSLREGIFNQF
RNPLFDQDIDVDDPGQSSNEWVSNSRIIPSKDETNIAAKPATSSLKLPFY
PNDGIDYPGSPVQWFAIPPFMYQHLQNWAAGDFSVTQVEKESANTIEELG
LFYSEQFKNSPNSALLCARGALDALYGGGFHPGVELTWPMRHNLIYSQND
YVSSVTPEINLLGLREFRLKQDLQGLNSPNMYQDFGHVIAVDNVTASIDP
NSDAAWLWRSTPGDLTKWMGIPWQSDAASCQAVYTPEDFPIPSWWAANLP
VHVLPLARYNKFKDSQSADLPEINGMTHSIAQGMSEETFEHLRLEQFSQR
LDWLHTADLGFVGYHAEGGYTNGLIQMVSQWKNMAMVMARPVENPGSSGI
PNVVYVAYSQADKD
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6vmw Chain A Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6vmw Roles of active-site residues in catalysis, substrate binding, cooperativity, and the reaction mechanism of the quinoprotein glycine oxidase.
Resolution1.99 Å
Binding residue
(original residue number in PDB)		D360 A362 I365 A699 N700
Binding residue
(residue number reindexed from 1)		D308 A310 I313 A647 N648
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6vmw, PDBe:6vmw, PDBj:6vmw
PDBsum6vmw
PubMed32234764
UniProtA0A161XU12

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