Structure of PDB 6vly Chain A Binding Site BS01

Receptor Information

>6vly Chain A (length=293) Species: 214856 (Alistipes finegoldii)

SGLVPRGSHMAYNLLKGKKGLIFGALNEQSIAWKVAERAVEEGAEIVLTN
TAVSIRMGTIGRLAEKCNTIVVPADATSVEDLENLIDKTMEHFGGKFDFM
LHSIGMSPNVRKGRTYDDLDYDYLSKTLDISAISFHKAIQVARKKDAIND
WGSIVALSYIAAQRTLYGYNDMADAKALLESIARSFGYIYGREKHVRINT
VSQSPTPTTAGSGVLGMGDLMNFAENMSPLGNASANDCADYVLTLFSDLT
RKVTMQNLYHDGGFASMGMSRRAMKTYEKGMRFEDVHQNQYPF

Ligand information

• Ligand ID: NAI
• InChI: InChI=1S/C21H29N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1,3-4,7-8,10-11,13-16,20-21,29-32H,2,5-6H2,(H2,23,33)(H,34,35)(H,36,37)(H2,22,24,25)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
• InChIKey: BOPGDPNILDQYTO-NNYOXOHSSA-N
• SMILES:
  OpenEye OEToolkits 1.5.0: c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)O)N
  CACTVS 3.341: NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
  OpenEye OEToolkits 1.5.0: c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CCC(=C5)C(=O)N)O)O)O)O)N
  CACTVS 3.341: NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
• Formula: C21 H29 N7 O14 P2
• Name: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE;
  NADH
• ChEMBL: CHEMBL1234616
• DrugBank: DB00157
• ZINC: ZINC000008215403
• PDB chain: 6vly Chain A Residue 302

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6vly The genome of a Bacteroidetes inhabitant of the human gut encodes a structurally distinct enoyl-acyl carrier protein reductase (FabI).
• Resolution: 1.86 Å
• Binding residue (original residue number in PDB): G15 S21 N41 T42 S45 D66 A67 S94 I95 L148 S149 K167 Q194 P196 T197 T199 A201
• Binding residue (residue number reindexed from 1): G24 S30 N50 T51 S54 D75 A76 S103 I104 L157 S158 K176 Q203 P205 T206 T208 A210
• Annotation score: 4
• Binding affinity: MOAD: Kd=225nM

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Nov 25 02:49:54 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6vly', asym_id = 'A', bs = 'BS01', title = 'The genome of a Bacteroidetes inhabitant of the ...nct enoyl-acyl carrier protein reductase (FabI). '

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6vly', asym_id='A', bs='BS01', title='The genome of a Bacteroidetes inhabitant of the ...nct enoyl-acyl carrier protein reductase (FabI). ')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0004318,0006633', uniprot = '', pdbid = '6vly', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004318,0006633', uniprot='', pdbid='6vly', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>