Structure of PDB 6vdf Chain A Binding Site BS01

Receptor Information

>6vdf Chain A (length=343) Species: 90371 (Salmonella enterica subsp. enterica serovar Typhimurium) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

VQYPLSNLHYRDMGTGQNVLLITVDGLNYSRFEKQMPELATFAEQNIDFT
RHMSSGNTTDNGIFGLFYGISPGYMDGVLSTRTPAALITALNQQGYQLGL
FSSDGFASPLYRQALLSDFSMPAAQTQSDAQTASQWIDWLGRYAQEDNRW
FSWISFNGTNIDDSNQKNFVKRYASAASDVDAQINRVLNALREAGKFDNT
VVIITAGRGIPLTPEENRFDWSQGHLQVPLVIHWPGTPAQRINVLTDHTD
VMTTLMQRLLHVSTPANEYSQGQDIFTVPRRHNWVTAADGSTLAITTPQM
TLVLNNNGHYQTYDLHGEKIKDQKPQLSLLLQVLTEEKRFIAN

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

6vdf Chain A Residue 604 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6vdf The essential inner membrane protein YejM is a metalloenzyme.
Resolution	1.92 Å
Binding residue (original residue number in PDB)	T301 T302 R451
Binding residue (residue number reindexed from 1)	T58 T59 R208
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:6vdf, PDBe:6vdf, PDBj:6vdf
PDBsum	6vdf
PubMed	33082366
UniProt	P40709\|YEJM_SALTY Inner membrane protein YejM (Gene Name=yejM)

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