Structure of PDB 6v4c Chain A Binding Site BS01
Receptor Information
>6v4c Chain A (length=294) Species:
7176
(Culex quinquefasciatus) [
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EWSPMDPEEVAFEEAKCMEDHFGNDFGLAEKWMKWSLAESDGKTACYVKC
LVEALGMYDKQAFQPNNIKQQYEAYKSDNGVDQTKGDAIANELGKIDAKD
GKCESIAKGFIQVNNANKGVLEKIYLLDSSVRDAIYKKNPQIKPKGISIF
RFCGKQFYQDGEAAYCNVRKHGFSDDPKFIKHSNCTTRGMRWMKKNGEMD
ESAILRGLHAVNENGKDDVVKKSLQNCKAKDESKARDYYKCIYDGLGEQL
FMKVLDYIEVRSENYSYRLREATSKYDANAMRSKVKALDSEAKC
Ligand information
Ligand ID
ADP
InChI
InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
XTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04
O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
Formula
C10 H15 N5 O10 P2
Name
ADENOSINE-5'-DIPHOSPHATE
ChEMBL
CHEMBL14830
DrugBank
DB16833
ZINC
ZINC000012360703
PDB chain
6v4c Chain A Residue 301 [
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Receptor-Ligand Complex Structure
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PDB
6v4c
ADP binding by the Culex quinquefasciatus mosquito D7 salivary protein enhances blood feeding on mammals.
Resolution
1.97 Å
Binding residue
(original residue number in PDB)
E9 A12 R133 Y137 K144 P145 K146 N265 Y266 S267
Binding residue
(residue number reindexed from 1)
E8 A11 R132 Y136 K143 P144 K145 N264 Y265 S266
Annotation score
4
Binding affinity
MOAD
: Kd=32.68nM
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0005524
ATP binding
GO:0005549
odorant binding
GO:0090729
toxin activity
Biological Process
GO:0035821
modulation of process of another organism
Cellular Component
GO:0005576
extracellular region
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:6v4c
,
PDBe:6v4c
,
PDBj:6v4c
PDBsum
6v4c
PubMed
32518308
UniProt
A0A1S4K3K8
|D7L1_CULQU Long form salivary protein D7L1 (Gene Name=D7L1)
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