Structure of PDB 6uox Chain A Binding Site BS01

Receptor Information
>6uox Chain A (length=1161) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGNVSL
CCDVRQLQTLKDNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLNV
TATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKAL
GLLCGKDADACNATNWIEYMFNKDNGQAPFTITPVFSDFPVHGMEPMNNA
TKGCDESVDEVTAPCSCQDCSIVCGPKPQPPPPPAPWTILGLDAMYVIMW
ITYMAFLLVFFGAFCLRRLFTRWGSFCVRNPGCVIFFSLVFITACSSGLV
FVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRAPLTDKHI
YQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICL
APLSPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRA
PASLNDTSLLHDPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNN
YYNDTEKLQRAQAWEKEFINFVKNYKNPNLTISFTAERSIEDELNRESDS
DVFTVVISYAIMFLYISLALGHVDSKVSLGIAGILIVLSSVACSLGVFSY
IGLPLTLIVIEVIPFLVLAVGVDNIFILVQAYQRDERLQGETLDQQLGRV
LGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGLAVFIDFLLQIT
CFVSLLGLDIKRQEKNRLDESCLFRFFKNSYSPLLLKDWMRPIVIAIFVG
VLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAGPPVYFVLE
EGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWID
DYFDWVKPQSSCCRVDNITDQFCNASVVDPACVRCRPLTPEGKQRPQGGD
FMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTV
LQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTI
IDDTIFNLGVSLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWL
WGISLNAVSLVNLVMSCGISVEFCSHITRAFTVSMKGSRVERAEEALAHM
GSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLAMVLLGATHGLIFL
PVLLSYIGPSV
Ligand information
Ligand IDQDG
InChIInChI=1S/C35H37BrCl2N8O4/c1-3-24(2)46-34(47)45(23-41-46)27-7-11-33(31(36)17-27)43-14-12-42(13-15-43)26-5-8-28(9-6-26)48-18-29-19-49-35(50-29,20-44-22-39-21-40-44)30-10-4-25(37)16-32(30)38/h4-11,16-17,21-24,29H,3,12-15,18-20H2,1-2H3/t24-,29-,35-/m0/s1
InChIKeyNLXNHAVZBIVNIU-DIDXUJGESA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC[CH](C)N1N=CN(C1=O)c2ccc(N3CCN(CC3)c4ccc(OC[CH]5CO[C](Cn6cncn6)(O5)c7ccc(Cl)cc7Cl)cc4)c(Br)c2
OpenEye OEToolkits 2.0.7CCC(C)N1C(=O)N(C=N1)c2ccc(c(c2)Br)N3CCN(CC3)c4ccc(cc4)OCC5COC(O5)(Cn6cncn6)c7ccc(cc7Cl)Cl
CACTVS 3.385CC[C@H](C)N1N=CN(C1=O)c2ccc(N3CCN(CC3)c4ccc(OC[C@H]5CO[C@@](Cn6cncn6)(O5)c7ccc(Cl)cc7Cl)cc4)c(Br)c2
ACDLabs 12.01C(C6(c1c(Cl)cc(cc1)Cl)OCC(COc2ccc(cc2)N5CCN(c3ccc(cc3Br)N4C(N(N=C4)C(C)CC)=O)CC5)O6)n7cncn7
OpenEye OEToolkits 2.0.7CC[C@H](C)N1C(=O)N(C=N1)c2ccc(c(c2)Br)N3CCN(CC3)c4ccc(cc4)OC[C@H]5CO[C@](O5)(Cn6cncn6)c7ccc(cc7Cl)Cl
FormulaC35 H37 Br Cl2 N8 O4
Name4-(3-bromo-4-{4-[4-({(2R,4S)-2-(2,4-dichlorophenyl)-2-[(1H-1,2,4-triazol-1-yl)methyl]-1,3-dioxolan-4-yl}methoxy)phenyl]piperazin-1-yl}phenyl)-2-[(2S)-butan-2-yl]-2,4-dihydro-3H-1,2,4-triazol-3-one
ChEMBL
DrugBank
ZINC
PDB chain6uox Chain A Residue 1314 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6uox Structural basis for itraconazole-mediated NPC1 inhibition.
Resolution4.02 Å
Binding residue
(original residue number in PDB)
V378 W381 V624 L684 I685 I687 Q862 F1087 I1220
Binding residue
(residue number reindexed from 1)
V309 W312 V555 L607 I608 I610 Q768 F993 I1126
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005319 lipid transporter activity
Cellular Component
GO:0016020 membrane

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:6uox, PDBe:6uox, PDBj:6uox
PDBsum6uox
PubMed31919352
UniProtO15118|NPC1_HUMAN NPC intracellular cholesterol transporter 1 (Gene Name=NPC1)

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