Structure of PDB 6uld Chain A Binding Site BS01

Receptor Information
>6uld Chain A (length=428) Species: 1773 (Mycobacterium tuberculosis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GSMSAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVL
TNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQA
NAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPAT
HLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVD
MAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRSGLIVGKQQYAKAIN
SAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLM
APDVAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNA
VPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALATGSSVDV
SALKDRATRLARAFPLYDGLEEWSLVGR
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain6uld Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6uld Crystal structure of serine hydroxymethyltransferase from Mycobacterium tuberculosis with bound PLP forming a Schiff base with substrate Serine in one monomer and PLP forming a Schiff base with product Glycine in the other monomer
Resolution1.5 Å
Binding residue
(original residue number in PDB)		S115 G116 A117 H144 W193 S194 D219 A221 H222 T245 H247 K248
Binding residue
(residue number reindexed from 1)		S96 G97 A98 H125 W174 S175 D200 A202 H203 T226 H228 K229
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 00:27:10 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6uld', asym_id = 'A', bs = 'BS01', title = 'Crystal structure of serine hydroxymethyltransfe...f base with product Glycine in the other monomer '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6uld', asym_id='A', bs='BS01', title='Crystal structure of serine hydroxymethyltransfe...f base with product Glycine in the other monomer ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004372,0019264,0030170,0035999', uniprot = '', pdbid = '6uld', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004372,0019264,0030170,0035999', uniprot='', pdbid='6uld', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>