Structure of PDB 6uj1 Chain A Binding Site BS01

Receptor Information
>6uj1 Chain A (length=367) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LAMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYID
TYFDTERSSTYRSKGFDVTVKYTQGSWTGFVGEDLVTIPKGFNTSFLVNI
ATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNV
FSMQMCGAGLPGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKL
EIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASFSDG
FWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPML
NYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCAEIAGA
AVSEISGPFSTASNCVP
Ligand information
Ligand IDL3M
InChIInChI=1S/C34H52N4O5S/c1-6-11-31(39)32(34(41)36-22-24(3)4)35-23-29-19-26-15-10-14-25(17-26)12-8-9-13-27-18-28(33(40)37-29)21-30(20-27)38(16-7-2)44(5,42)43/h10,14-15,17-18,20-21,24,29,31-32,35,39H,6-9,11-13,16,19,22-23H2,1-5H3,(H,36,41)(H,37,40)/t29-,31-,32-/m0/s1
InChIKeyBUVUUWHTEARFCT-GOBOWQCMSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCC[C@H](O)[C@H](NC[C@@H]1Cc2cccc(CCCCc3cc(cc(c3)C(=O)N1)N(CCC)[S](C)(=O)=O)c2)C(=O)NCC(C)C
ACDLabs 12.01O=C3c1cc(cc(c1)CCCCc2cc(ccc2)CC(CNC(C(CCC)O)C(=O)NCC(C)C)N3)N(CCC)S(C)(=O)=O
OpenEye OEToolkits 2.0.7CCCC(C(C(=O)NCC(C)C)NCC1Cc2cccc(c2)CCCCc3cc(cc(c3)N(CCC)S(=O)(=O)C)C(=O)N1)O
OpenEye OEToolkits 2.0.7CCC[C@@H]([C@@H](C(=O)NCC(C)C)NC[C@@H]1Cc2cccc(c2)CCCCc3cc(cc(c3)N(CCC)S(=O)(=O)C)C(=O)N1)O
CACTVS 3.385CCC[CH](O)[CH](NC[CH]1Cc2cccc(CCCCc3cc(cc(c3)C(=O)N1)N(CCC)[S](C)(=O)=O)c2)C(=O)NCC(C)C
FormulaC34 H52 N4 O5 S
Name(3S)-3-hydroxy-N-(2-methylpropyl)-N~2~-{[(4S)-17-[(methylsulfonyl)(propyl)amino]-2-oxo-3-azatricyclo[13.3.1.1~6,10~]icosa-1(19),6(20),7,9,15,17-hexaen-4-yl]methyl}-L-norleucinamide
ChEMBL
DrugBank
ZINC
PDB chain6uj1 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6uj1 A Structure-Based Discovery Platform for BACE2 and the Development of Selective BACE Inhibitors.
Resolution3.03 Å
Binding residue
(original residue number in PDB)
D48 G50 K86 Y87 T88 Q89 F124 Y211 D241 G243 T244 T245 L246 R248
Binding residue
(residue number reindexed from 1)
D33 G35 K71 Y72 T73 Q74 F109 Y192 D222 G224 T225 T226 L227 R229
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.23.45: memapsin 1.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0016020 membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6uj1, PDBe:6uj1, PDBj:6uj1
PDBsum6uj1
PubMed33544569
UniProtQ9Y5Z0|BACE2_HUMAN Beta-secretase 2 (Gene Name=BACE2)

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