Structure of PDB 6u7f Chain A Binding Site BS01

Receptor Information
>6u7f Chain A (length=897) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DQSKAWNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKE
ATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVH
LKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYMEGNVRKVVATTQMQAA
DARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWN
VTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGD
YALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYREN
SLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFAS
YVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTP
AQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYL
NLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTLSQEH
FLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTS
GNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQIINDA
FNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVY
GPMKNYLKKQVTPLFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGV
PECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQ
FRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQDATSTIIS
ITNNVIGQGLVWDFVQSNWKKLFNDFSFSNLIQAVTRRFSTEYELQQLEQ
FKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6u7f Chain A Residue 5001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6u7f The human coronavirus HCoV-229E S-protein structure and receptor binding.
Resolution2.75 Å
Binding residue
(original residue number in PDB)		H388 H392 E411
Binding residue
(residue number reindexed from 1)		H323 H327 E346
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) E355 H388 E389 H392 E411 S469 Y477
Catalytic site (residue number reindexed from 1) E290 H323 E324 H327 E346 S404 Y412
Enzyme Commision number 3.4.11.2: membrane alanyl aminopeptidase.
Gene Ontology
Molecular Function
GO:0001618 virus receptor activity
GO:0004177 aminopeptidase activity
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
GO:0038023 signaling receptor activity
GO:0042277 peptide binding
GO:0046872 metal ion binding
GO:0070006 metalloaminopeptidase activity
Biological Process
GO:0001525 angiogenesis
GO:0006508 proteolysis
GO:0030154 cell differentiation
GO:0043171 peptide catabolic process
GO:0046718 symbiont entry into host cell
Cellular Component
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005765 lysosomal membrane
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment
GO:0005886 plasma membrane
GO:0009897 external side of plasma membrane
GO:0030667 secretory granule membrane
GO:0070062 extracellular exosome

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6u7f, PDBe:6u7f, PDBj:6u7f
PDBsum6u7f
PubMed31650956
UniProtP15144|AMPN_HUMAN Aminopeptidase N (Gene Name=ANPEP)

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