Structure of PDB 6tut Chain A Binding Site BS01

Receptor Information
>6tut Chain A (length=1390) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KEVVVSETPKRIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKAN
GALDPKMGVSSSSLECATCHGNLASCHGHFGHLKLALPVFHIGYFKATIQ
ILQGICKNCSAILLSETDKRQFLHELRRPGVDNLRRMGILKKILDQCKKQ
RRCLHCGALNGVVKKAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLAHN
PELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIW
RYLPAPPVCIRPSVNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHW
DYLQLTVAMYINSDPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPD
PNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGANYLL
KRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLS
ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINL
MGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMS
DGIEHFDIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFV
PPKSKSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRD
YGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIA
YHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINE
LDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPH
FPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGY
MSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNAQPVN
FNRSWDHAYNITFNNQDKGLLPYAIMETANEILGPLEERLVRYDNSGCLV
KREDLNKAEYVDQYDAERDFYHSLREYINGKATALANLRKSRGMLGLLEP
PAKELQGIDPDETVPDNVKTSVSQLYRISEKSVRKFLEIALFKYRKARLE
PGTAIGAIGAQSIGEPGSMNVTLGVPRIKEIINASKVISTPIINAVLVND
NDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKLQL
ELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPDVFYRMQQLRRA
LPDVVVKGLPDISRAVINIRDDGKRELLVEGYGLRDVMCTDGVIGSRTTT
NHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKG
EVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECII
LGQTMSIGTGSFKVVKGTNISEKDLVPKRCLFESLSNEAA
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6tut Chain A Residue 2000 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6tut Structural basis for RNA polymerase III transcription repression by Maf1.
Resolution3.25 Å
Binding residue
(original residue number in PDB)		C67 H80
Binding residue
(residue number reindexed from 1)		C66 H79
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0001056 RNA polymerase III activity
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0005515 protein binding
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
GO:0006383 transcription by RNA polymerase III
GO:0006384 transcription initiation at RNA polymerase III promoter
GO:0006386 termination of RNA polymerase III transcription
GO:0042797 tRNA transcription by RNA polymerase III
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005666 RNA polymerase III complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6tut, PDBe:6tut, PDBj:6tut
PDBsum6tut
PubMed32066962
UniProtP04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 (Gene Name=RPO31)

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