Structure of PDB 6tbh Chain A Binding Site BS01

Receptor Information
>6tbh Chain A (length=539) Species: 498211 (Cellvibrio japonicus Ueda107) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AAPLPELLSNNGKHALMVDGAPYIILGSQTNNSSNYPDALKDVWPSMEKM
GANTLSIPVAWEQIEPVEGQFDFSFVDVLLKEARQRKVRLVLLWFATWKN
NAPHYAPAWVKLDNARFPRVVKEDGDTLNSLSPLGQNTLAADKKAFVELM
KYLAKRDKDHTVIMVQVQNEVGTYGAVRDYSPMAQAVFNAAVPDDLIQKL
QLKPGTWSQVFGRDADEFFHAYQIARYCDEVTVAGKAIKNLPMYVNVALR
NPFNPGLPGQYSSGGGTDNVLHIWKAAAPNIDLIAPDIYFRDYKTVSKVL
ELYTRPDNALFVAEIGNDQPFARYLFPTLGKGGIGFSPFGMDDTDYTNYP
LGAKVYNDETIEQFAQVYRLVNPMMREWARLSYQGQVWGVAEPLDSTTET
QKWNAEATPEEKEQHKKDRASALTQQLDLGLWDAEVTYGRPMFWVTPPEG
NTPAAGGALIAQLDDNEYLVTAYKARVEFKPSQELAGKKFMIERVEEGRF
EKGKWVMERVWNGDQTDWGLNFTDRPHLLRVKMASYSVQ
Ligand information
Ligand IDN0K
InChIInChI=1S/C24H37N3O5S/c1-27(2)21-11-7-10-18-17(21)9-8-12-23(18)33(31,32)26-14-6-4-3-5-13-25-20-15-22(29)24(30)19(20)16-28/h7-12,19-20,22,24-26,28-30H,3-6,13-16H2,1-2H3/t19-,20-,22+,24-/m0/s1
InChIKeyYQJKLKLPVRSCCE-QRVLJTFESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CN(C)c1cccc2c1cccc2S(=O)(=O)NCCCCCCN[C@H]3C[C@H]([C@H]([C@H]3CO)O)O
CACTVS 3.385CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCCCCCN[C@H]3C[C@@H](O)[C@@H](O)[C@H]3CO
OpenEye OEToolkits 2.0.7CN(C)c1cccc2c1cccc2S(=O)(=O)NCCCCCCNC3CC(C(C3CO)O)O
CACTVS 3.385CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCCCCCN[CH]3C[CH](O)[CH](O)[CH]3CO
FormulaC24 H37 N3 O5 S
Name5-[ethyl(methyl)amino]-~{N}-[6-[[(1~{S},2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]amino]hexyl]naphthalene-1-sulfonamide
ChEMBL
DrugBank
ZINC
PDB chain6tbh Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6tbh Mechanistic Insights into the Chaperoning of Human Lysosomal-Galactosidase Activity: Highly Functionalized Aminocyclopentanes and C -5a-Substituted Derivatives of 4- epi -Isofagomine.
Resolution1.5 Å
Binding residue
(original residue number in PDB)
N67 K134 N135 E205 Y324 F325 E349 F374 N383 L386
Binding residue
(residue number reindexed from 1)
N32 K99 N100 E170 Y289 F290 E314 F339 N348 L351
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.23: beta-galactosidase.
Gene Ontology
Molecular Function
GO:0004565 beta-galactosidase activity
Biological Process
GO:0005975 carbohydrate metabolic process
Cellular Component
GO:0009341 beta-galactosidase complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6tbh, PDBe:6tbh, PDBj:6tbh
PDBsum6tbh
PubMed32899288
UniProtB3PBE0

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