Structure of PDB 6stu Chain A Binding Site BS01

Receptor Information

>6stu Chain A (length=204) Species: 46932 (Human adenovirus 30)

KNNDKLTLWTTPDPSPNCKVSEEKDSKLTLVLTKCGSQILASVSLLVVKG
KFANINNETNPGEDYKKFSVKLLFDANGKLLTGSSLDGNYWNYKNKDSVI
GSPYENAVPFMPNSTAYPKIINNGTANPEDKKSAAKKTIVTNVYLGGDAG
QPVATTVSFNKETESNCVYSITFDFAWNKTYKNVPFDSSSLTFSYIAQDA
EDKN

Ligand information

• Ligand ID: GLU
• InChI: InChI=1S/C5H9NO4/c6-3(5(9)10)1-2-4(7)8/h3H,1-2,6H2,(H,7,8)(H,9,10)/t3-/m0/s1
• InChIKey: WHUUTDBJXJRKMK-VKHMYHEASA-N
• SMILES:
  ACDLabs 12.01: O=C(O)C(N)CCC(=O)O
  OpenEye OEToolkits 1.7.0: C(CC(=O)O)C(C(=O)O)N
  OpenEye OEToolkits 1.7.0: C(CC(=O)O)[C@@H](C(=O)O)N
  CACTVS 3.370: N[C@@H](CCC(O)=O)C(O)=O
  CACTVS 3.370: N[CH](CCC(O)=O)C(O)=O
• Formula: C5 H9 N O4
• Name: GLUTAMIC ACID
• ChEMBL: CHEMBL575060
• DrugBank: DB00142
• ZINC: ZINC000001482113
• PDB chain: 6stu Chain A Residue 401

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6stu The fiber knob protein of human adenovirus type 49 mediates highly efficient and promiscuous infection of cancer cell lines using a novel cell entry mechanism
• Resolution: 2.39 Å
• Binding residue (original residue number in PDB): K383 N384
• Binding residue (residue number reindexed from 1): K203 N204
• Annotation score: 4

Gene Ontology

Biological Process

• GO:0007155 cell adhesion
• GO:0019058 viral life cycle
• GO:0019062 virion attachment to host cell

Cellular Component

• GO:0019028 viral capsid

External links

• PDB: RCSB:6stu, PDBe:6stu, PDBj:6stu
• PDBsum: 6stu
• UniProt: M0QTV3