Structure of PDB 6ssd Chain A Binding Site BS01

Receptor Information
>6ssd Chain A (length=424) Species: 212423 (Streptomyces kaniharaensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AMITEKSAALYARAVEVMPGGNSRTAVYSSPYPVYVRSGSGARVTDVDGV
ERIDFLNNSTTLIHGHAHPEMVEAIAAAVGHGTSFGMPTPVEVEYAEALS
ARNETFEHVRFTSSGTEAVMMAVQAARAYTERPKIAKIAGAYHGAYDAVA
VNNDGSGNLISHAVTGNPEGVVANTVVIPFNDPEGSLEVLRRHADDLACV
LIDPVPWRIGLLPASKEWLDALREFCDASGAVLISDEVGSYRVGYHGAMQ
LLGAEADITVMGKVIAAGMPIGAVAGRRRFMSVFDPSKGKPALPHSGSYN
ANPVSMSSGIASLRLLTPQAHERIGQLGEQARGSMRTALGEAGLDWEVNG
LGSLFRVVANSAPAGYDSAAAAMKALYWKLLENGIHIGDSGLGCISTPMG
EEEIAEYAVAFAKSLGQVLAEGRA
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain6ssd Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6ssd PMP-diketopiperazine adducts form at the active site of a PLP dependent enzyme involved in formycin biosynthesis.
Resolution1.18 Å
Binding residue
(original residue number in PDB)		G114 T115 H142 D235 V237 G238 K262
Binding residue
(residue number reindexed from 1)		G115 T116 H143 D236 V238 G239 K263
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 00:37:11 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6ssd', asym_id = 'A', bs = 'BS01', title = 'PMP-diketopiperazine adducts form at the active ...pendent enzyme involved in formycin biosynthesis.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6ssd', asym_id='A', bs='BS01', title='PMP-diketopiperazine adducts form at the active ...pendent enzyme involved in formycin biosynthesis.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0008483,0030170', uniprot = '', pdbid = '6ssd', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008483,0030170', uniprot='', pdbid='6ssd', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>