Structure of PDB 6sm3 Chain A Binding Site BS01

Receptor Information
>6sm3 Chain A (length=482) Species: 242619 (Porphyromonas gingivalis W83) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
CELDRDPEGKDFQQPYTSFVQTKQNRDGLYALLRNTENPRMHFYQELQSD
MYCTTITDGNSLAPFVNWDLGILNDHGRADEDEVSGIAGYYFVYNRLNQQ
ANAFVNNTEAALQNQVYKNSTEIANAKSFLAEGKVLQALAIWRLMDRFSF
HESVTEVNSGAKDLGVILLKEYNPGYIGPRATKAQCYDYILSRLSEAIEV
LPENRESVLYVSRDYAYALRARIYLALGEYGKAAADAKMVVDKYPLIGAA
DASEFENIYRSDANNPEIIFRGFASATLGSFTATTLNGAAPAGKDIKYNP
SAVPFQWVVDLYENEDFRKSVYIAKVVKKDKGYLVNKFLEDKAYRDVQDK
PNLKVGARYFSVAEVYLILVESALQTGDTPTAEKYLKALSKARGAEVSVV
NMEALQAERTRELIGEGSRLRDMVRWSIPNNHDAFETQPGLEGFANTTPL
KAQAPVGFYAYTWEFPQRDRQTNPQLIKNWPI
Ligand information
>6sm3 Chain C (length=13) Species: 242619 (Porphyromonas gingivalis W83) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
GGATTATTTTSTS
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6sm3 Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		G78 N79
Binding residue
(residue number reindexed from 1)		G59 N60
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6sm3, PDBe:6sm3, PDBj:6sm3
PDBsum6sm3
PubMed32393857
UniProtF5H948

[Back to BioLiP]