Structure of PDB 6rvz Chain A Binding Site BS01

Receptor Information
>6rvz Chain A (length=346) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GVIKRNWEYINKFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFP
NILKEIKHFDADVLCLQEVQEDHYGAEIRPSLESLGYHCEYKMRTGRKPD
GCAICFKHSKFSLLSVNPVEFFRPDISLLDRDNVGLVLLLQPKIPCPAIC
VANTHLLYNPRRGDIKLTQLAMLLAEISSVAHQKDGSFCPIVMCGDFNSV
PGSPLYSFIKEGKLNYEGLPIGKVSGQEQSSRGQRILSIPIWPPNLGISQ
NCVYEVQQVPSSNLQHHFSLSSVYSHYFPDTGIPEVTTCHSRSAITVDYI
FYSAGLKLLARLSLLTEQDLWTVNGLPNENNSSDHLPLLAKFRLEL
Ligand information
Ligand IDKL2
InChIInChI=1S/C10H11N5O4.3H2O.V/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10;;;;/h2-4,6-7,10,16H,1H2,(H2,11,12,13);3*1H2;/q-2;;;;+5/p-3/t4-,6-,7-,10-;;;;/m1..../s1
InChIKeyVVVFQERUKYCTSH-KWIZKVQNSA-K
SMILES
SoftwareSMILES
CACTVS 3.385Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO)[C@H]4O[V](O)(O)(O)O[C@@H]34
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)C3C4C(C(O3)CO)O[V](O4)(O)(O)O)N
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)CO)O[V](O4)(O)(O)O)N
CACTVS 3.385Nc1ncnc2n(cnc12)[CH]3O[CH](CO)[CH]4O[V](O)(O)(O)O[CH]34
FormulaC10 H14 N5 O7 V
Nameadenosine-2',3'-vanadate;
[(1~{R},5~{R},6~{R},8~{R})-8-(6-aminopurin-9-yl)-3,3,3-tris(oxidanyl)-2,4,7-trioxa-3$l^{5}-vanadabicyclo[3.3.0]octan-6-yl]methanol
ChEMBL
DrugBank
ZINC
PDB chain6rvz Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6rvz ANGEL2 is a member of the CCR4 family of deadenylases with 2',3'-cyclic phosphatase activity.
Resolution2.1 Å
Binding residue
(original residue number in PDB)
N173 L179 N183 L186 E220 H310 Y313 D351 N353 H533
Binding residue
(residue number reindexed from 1)
N21 L27 N31 L34 E68 H155 Y158 D196 N198 H335
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity

View graph for
Molecular Function
External links
PDB RCSB:6rvz, PDBe:6rvz, PDBj:6rvz
PDBsum6rvz
PubMed32732418
UniProtQ5VTE6|ANGE2_HUMAN Protein angel homolog 2 (Gene Name=ANGEL2)

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