Structure of PDB 6rm8 Chain A Binding Site BS01

Receptor Information
>6rm8 Chain A (length=655) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SPEFTPEQRLLKQKIEEAERAQRTIQEVRKSLPVYAYRDAFLDAVKEYQV
LILVGETGSGKTTQIPQYLHEAGYTKGNRKIACTQPRRVAAMSVAARVAD
EMGVRLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREMVTSPDLADYSCI
MIDEAHERTVHTDILLALIKDLTRARPELRLIISSATLNAEKFSAYFDDA
PIFNVPGRVHPVEVYYTSAPESNYLEAALVTVFQIHATQPEGDILVFLTG
QEEIERACERVEEIRRKLGKRVPEIIALPIYSNMPSEMQAKIFEPTPPGA
RKVVFSTNIAETSLTIDGIVYVIDSGYVKENTFSPVGTTGQSTLAVVPCS
RAAANQRMGRAGRVKPGKCFRLYTKYAYLSEMDESPTPEIQRTSLSSVVL
QLKALGIDDLLGFDFLDPPPTELLIKSLNMLYALGALNSAGQLTRVGRQM
GEFPTEPMLAKALIAATQEGCVSEVLTIVSMLGEVGTLFFRPKDKKVHAD
SARARFTVRDGGDHLTLLNIYNQWVEAEYSPIWARENFLAQRSLTRARDV
RDQLAKLCDRILDGSEASCGGVNNPTPILRALTAAFFLNAARLNRAGDGY
RTLKNNITVYVHPSSVVRGMDPPPKVIIYHELVVTSKEYVRSVIPVEPRW
LSEFG
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain6rm8 Chain A Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6rm8 Structural analysis of the intrinsically disordered splicing factor Spp2 and its binding to the DEAH-box ATPase Prp2.
Resolution1.95 Å
Binding residue
(original residue number in PDB)		G323 G325 K326 T327 T328 R362 F558 T580 D582 R628
Binding residue
(residue number reindexed from 1)		G58 G60 K61 T62 T63 R97 F293 T315 D317 R363
Annotation score5
Enzymatic activity
Enzyme Commision number 3.6.4.13: RNA helicase.
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0005524 ATP binding

View graph for
Molecular Function
External links
PDB RCSB:6rm8, PDBe:6rm8, PDBj:6rm8
PDBsum6rm8
PubMed31974312
UniProtG0SEG4

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