Structure of PDB 6r0r Chain A Binding Site BS01

Receptor Information
>6r0r Chain A (length=162) Species: 59300 (Getah virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKAPSYRVRRADISGHGEEAVVNAANAKGTVSDGVCRAVAKKWPSSFKGA
ATPVGTAKMIRADGMTVIHAVGPNFSTVTEAEGDRELAAAYRAVASIIST
NNIKSVAVPLLSTGTFSGGKDRVMQSLNHLFTALDATDADVVIYCRDKNW
EKKIQEAIDRRT
Ligand information
Ligand IDJNT
InChIInChI=1S/C15H25N5O14P2/c16-13-9-14(18-4-17-13)20(5-19-9)15-12(26)11(25)8(33-15)3-32-36(29,30)34-35(27,28)31-2-7(23)10(24)6(22)1-21/h4-8,10-12,15,21-26H,1-3H2,(H,27,28)(H,29,30)(H2,16,17,18)/t6-,7+,8+,10-,11+,12+,15+/m0/s1
InChIKeyQKJRZYRQRSLXSV-AOOZFPJJSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@H]([C@H]([C@H](CO)O)O)O)O)O)N
CACTVS 3.385Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH](O)[CH](O)[CH](O)CO)[CH](O)[CH]3O
CACTVS 3.385Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@@H](O)[C@@H](O)[C@@H](O)CO)[C@@H](O)[C@H]3O
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC(C(C(CO)O)O)O)O)O)N
FormulaC15 H25 N5 O14 P2
Name[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain6r0r Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6r0r Snapshots of ADP-ribose bound to Getah virus macro domain reveal an intriguing choreography.
Resolution1.45 Å
Binding residue
(original residue number in PDB)
D10 I11 A22 N24 S30 G32 V33 C34 S110 T111 G112 T113 F114 W148
Binding residue
(residue number reindexed from 1)
D12 I13 A24 N26 S32 G34 V35 C36 S112 T113 G114 T115 F116 W150
Annotation score3
Enzymatic activity
Enzyme Commision number 2.1.1.-
2.7.7.-
2.7.7.19: polynucleotide adenylyltransferase.
2.7.7.48: RNA-directed RNA polymerase.
3.1.3.84: ADP-ribose 1''-phosphate phosphatase.
3.4.22.-
3.6.1.15: nucleoside-triphosphate phosphatase.
3.6.1.74: mRNA 5'-phosphatase.
3.6.4.13: RNA helicase.
External links
PDB RCSB:6r0r, PDBe:6r0r, PDBj:6r0r
PDBsum6r0r
PubMed32879358
UniProtQ5Y389|POLN_GETV Polyprotein P1234

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