Structure of PDB 6q1r Chain A Binding Site BS01

Receptor Information
>6q1r Chain A (length=283) Species: 83332 (Mycobacterium tuberculosis H37Rv) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AMVVTLDGEILQPGMPLLHADDLAAVRGDGVFETLLVRDGRACLVEAHLQ
RLTQSARLMDLPEPDLPRWRRAVEVATQRWVASTADEGALRLIYSRGREG
GSAPTAYVMVSPVPARVIGARRDGVSAITLDRGLPADGGDAMPWLIASAK
TLSYAVNMAVLRHAARQGAGDVIFVSTDGYVLEGPRSTVVIATDPCLLTP
PPWYPILRGTTQQALFEVARAKGYDCDYRALRVADLFDSQGIWLVSSMTL
AARVHTLDGRRLPRTPIAEVFAELVDAAIVSDR
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain6q1r Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6q1r A hypothetical aminotransferase from Mycobacterium tuberculosis
Resolution2.702 Å
Binding residue
(original residue number in PDB)		R50 K149 Y153 E182 P184 S186 T187 L213 G215 T216 T217 S253
Binding residue
(residue number reindexed from 1)		R51 K150 Y154 E183 P185 S187 T188 L207 G209 T210 T211 S247
Annotation score1
Enzymatic activity
Enzyme Commision number 2.6.1.21: D-amino-acid transaminase.
4.1.3.38: aminodeoxychorismate lyase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008483 transaminase activity
GO:0008696 4-amino-4-deoxychorismate lyase activity
GO:0016829 lyase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0008360 regulation of cell shape
GO:0009252 peptidoglycan biosynthetic process
GO:0019752 carboxylic acid metabolic process
GO:0046394 carboxylic acid biosynthetic process
GO:0046654 tetrahydrofolate biosynthetic process
GO:0046656 folic acid biosynthetic process
Cellular Component
GO:0005829 cytosol
GO:0005886 plasma membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6q1r, PDBe:6q1r, PDBj:6q1r
PDBsum6q1r
PubMed
UniProtQ79FW0|BALDT_MYCTU Bifunctional aminodeoxychorismate lyase / D-amino acid transaminase (Gene Name=Rv0812)

[Back to BioLiP]