Structure of PDB 6pmu Chain A Binding Site BS01

Receptor Information

>6pmu Chain A (length=279) Species: 32264 (Tetranychus urticae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TVDRINGITPSALDLIGNTPLIALDRLWPGPGRLLAKCEFLNPTASLKDR
SSYYMIAKAKESGQLKDGESVIEVTSGNQGGGIACVTAVMGHPFTVTMSK
GNSPQRAIMMNALGANVILVDQVTGKPGNVTADDVAAAEETAMKIREETN
AYYVDQFNNPTNCLAHYETTGPEIWRQTNGRIDAFLVGCGTGGCFVGTSK
FLKEKNPNVRCFVVEPEDSISVSDEEAIEYRKLLGQKEGLFCGFTTGGNI
AAAIKLLKSGQLPKDAWVVTILCDSGLKY

Ligand information

Ligand ID

PLP

InChI

InChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)

InChIKey

NGVDGCNFYWLIFO-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0	Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04	O=P(O)(O)OCc1cnc(c(O)c1C=O)C

Formula

C8 H10 N O6 P

Name

PYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate

PDB chain

6pmu Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6pmu Structural Characterization of Beta Cyanoalanine Synthase from Tetranychus Urticae
Resolution	2.1 Å
Binding residue (original residue number in PDB)	L51 K52 N82 C193 G194 T195 G196 C198 T284 C312 D313
Binding residue (residue number reindexed from 1)	L47 K48 N78 C189 G190 T191 G192 C194 T245 C273 D274
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Biological Process
GO:0019344	cysteine biosynthetic process

	Cellular Component
GO:0005737	cytoplasm

View graph for
Biological Process

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Cellular Component

External links

PDB	RCSB:6pmu, PDBe:6pmu, PDBj:6pmu
PDBsum	6pmu
PubMed
UniProt	T1KF23

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