Structure of PDB 6pl9 Chain A Binding Site BS01

Receptor Information
>6pl9 Chain A (length=129) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDORS
InChIInChI=1S/C10H15.2ClH.Rh/c1-6-7(2)9(4)10(5)8(6)3;;;/h1-5H3;2*1H;/q;;;+2/p-2
InChIKeyQVLTVILSYOWFRM-UHFFFAOYSA-L
SMILES
SoftwareSMILES
ACDLabs 12.01C12(C)C3(C)C4(C)C5(C)C1(C)[Rh]2345(Cl)Cl
CACTVS 3.385CC1C(C)C(C)C(C)C1C.Cl[Rh]Cl
OpenEye OEToolkits 2.0.7CC12C3([Rh]145(C2(C4(C53C)C)C)(Cl)Cl)C
FormulaC10 H15 Cl2 Rh
Namedichloro[(1,2,3,4,5-eta)-pentamethylcyclopentadienyl]rhodium
ChEMBL
DrugBank
ZINC
PDB chain6pl9 Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6pl9 Probing the Paradigm of Promiscuity for N-Heterocyclic Carbene Complexes and their Protein Adduct Formation.
Resolution1.2 Å
Binding residue
(original residue number in PDB)		A11 H15 D87 I88
Binding residue
(residue number reindexed from 1)		A11 H15 D87 I88
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6pl9, PDBe:6pl9, PDBj:6pl9
PDBsum6pl9
PubMed34196088
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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