Structure of PDB 6pj9 Chain A Binding Site BS01

Receptor Information

>6pj9 Chain A (length=176) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHA
LMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKF
SGPWFGGLSGVVFALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWF
DSMANGAHIAGLAVGLAMAFVDSLNA

Ligand information

>6pj9 Chain B (length=4) Species: 7227 (Drosophila melanogaster) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

VRMA

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6pj9 Ten catalytic snapshots of rhomboid intramembrane proteolysis from gate opening to peptide release.
Resolution	2.5 Å
Binding residue (original residue number in PDB)	H150 S193 W196 F197 G198 G199 S201 S248 M249 A250
Binding residue (residue number reindexed from 1)	H58 S101 W104 F105 G106 G107 S109 S152 M153 A154

Enzymatic activity

Enzyme Commision number

3.4.21.105: rhomboid protease.

Gene Ontology

	Molecular Function
GO:0004252	serine-type endopeptidase activity

	Biological Process
GO:0006508	proteolysis

	Cellular Component
GO:0016020	membrane

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Cellular Component

External links

PDB	RCSB:6pj9, PDBe:6pj9, PDBj:6pj9
PDBsum	6pj9
PubMed	31570873
UniProt	P09391\|GLPG_ECOLI Rhomboid protease GlpG (Gene Name=glpG)

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