Structure of PDB 6pa7 Chain A Binding Site BS01

Receptor Information
>6pa7 Chain A (length=99) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
SAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Ligand information
>6pa7 Chain I (length=166) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
tcggccgccctggagaatcccggtgccgaggccgctcaattggtcgtaga
cagctctagcaccgcttaaacgcacgtacgcgctgtcccccgcgttttaa
ccgccaaggggattactccctagtctccaggcacgtgtcagatatataca
tcctgtggcggccgat
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6pa7 Structure of nucleosome-bound DNA methyltransferases DNMT3A and DNMT3B.
Resolution2.94 Å
Binding residue
(original residue number in PDB)
R40 Y41 P43 V46 A47 R49 R63 K64 L65 P66 R69
Binding residue
(residue number reindexed from 1)
R4 Y5 P7 V10 A11 R13 R27 K28 L29 P30 R33
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:6pa7, PDBe:6pa7, PDBj:6pa7
PDBsum6pa7
PubMed32968275
UniProtP84233|H32_XENLA Histone H3.2

[Back to BioLiP]