Structure of PDB 6p58 Chain A Binding Site BS01

Receptor Information
>6p58 Chain A (length=150) Species: 197221 (Thermosynechococcus vestitus BP-1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SELRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQ
ARDQVIEDPCFREHWVEAYRQGRIQATTDIFKAGLTECHLNQLRPLKVRA
NLVVPMVIDDQLFGLLIAHQASEPRQWQEIEIDQFSELASTGSLVLERLH
Ligand information
Ligand IDVRB
InChIInChI=1S/C33H42N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h13,27,34-35H,7-12,14-15H2,1-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13-/t27-/m1/s1
InChIKeyKTSIPBCNIBDFRK-JTNIOKRPSA-N
SMILES
SoftwareSMILES
CACTVS 3.370CCC1=C(C)C(=O)N[CH]1Cc2[nH]c(Cc3[nH]c(C=C4NC(=O)C(=C4C)CC)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C
OpenEye OEToolkits 1.7.6CCC1=C(C(=O)NC1Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)/C=C\4/C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C
CACTVS 3.370CCC1=C(C)C(=O)N[C@@H]1Cc2[nH]c(Cc3[nH]c(\C=C4/NC(=O)C(=C4C)CC)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C
OpenEye OEToolkits 1.7.6CCC1=C(C(=O)NC1Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)C=C4C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C
FormulaC33 H42 N4 O6
NamePhycoviolobilin, blue light-absorbing form;
3-[5-[(3-ethyl-4-methyl-5-oxidanylidene-1,2-dihydropyrrol-2-yl)methyl]-2-[[5-[(Z)-(4-ethyl-3-methyl-5-oxidanylidene-pyr rol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid
ChEMBL
DrugBank
ZINCZINC000098209538
PDB chain6p58 Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6p58 Photoreversible interconversion of a phytochrome photosensory module in the crystalline state.
Resolution1.499 Å
Binding residue
(original residue number in PDB)
Y463 D492 P493 C494 F495 W499 Y503 R507 Q509 C522 H523 L527 N535 I551 H553
Binding residue
(residue number reindexed from 1)
Y29 D58 P59 C60 F61 W65 Y69 R73 Q75 C88 H89 L93 N101 I117 H119
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links