Structure of PDB 6p0p Chain A Binding Site BS01

Receptor Information
>6p0p Chain A (length=243) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDV
KDLAALRVQLREQHLYYQDQLLPVSRIIVHPQFYTAQIGADIALLELEEP
VKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKV
PIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTRRDSCQGDSGGPLVC
KVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPK
Ligand information
Ligand IDY35
InChIInChI=1S/C44H46BN4O5/c46-28-30-5-1-7-34(23-30)32-15-19-48(20-16-32)43(50)38-11-3-9-36(25-38)37-10-4-12-40(26-37)45(52)53-41-14-13-39(27-42(41)54-45)44(51)49-21-17-33(18-22-49)35-8-2-6-31(24-35)29-47/h1-14,23-27,32-33,52H,15-22,28-29,46-47H2/q-1/t45-/m1/s1
InChIKeyBXWXLCXUQLTPFH-WBVITSLISA-N
SMILES
SoftwareSMILES
CACTVS 3.385NCc1cccc(c1)[CH]2CCN(CC2)C(=O)c3cccc(c3)c4cccc(c4)[B-]5(O)Oc6ccc(cc6O5)C(=O)N7CC[CH](CC7)c8cccc(CN)c8
CACTVS 3.385NCc1cccc(c1)[C@H]2CCN(CC2)C(=O)c3cccc(c3)c4cccc(c4)[B-]5(O)Oc6ccc(cc6O5)C(=O)N7CC[C@@H](CC7)c8cccc(CN)c8
OpenEye OEToolkits 2.0.7[B-]1(Oc2ccc(cc2O1)C(=O)N3CCC(CC3)c4cccc(c4)CN)(c5cccc(c5)c6cccc(c6)C(=O)N7CCC(CC7)c8cccc(c8)CN)O
ACDLabs 12.01O=C(N2CCC(c1cc(ccc1)CN)CC2)c3cccc(c3)c4cc(ccc4)[B-]5(Oc6c(O5)cc(cc6)C(=O)N7CCC(CC7)c8cc(ccc8)CN)O
FormulaC44 H46 B N4 O5
Name(3'-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}[1,1'-biphenyl]-3-yl){4-[3-(aminomethyl)phenyl]piperidin-1-yl}[3,4-di(hydroxy-kappaO)phenyl]methanonato(2-)hydroxyborate(1-)
ChEMBL
DrugBank
ZINC
PDB chain6p0p Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6p0p Novel, Self-Assembling Dimeric Inhibitors of Human beta Tryptase.
Resolution2.55 Å
Binding residue
(original residue number in PDB)
D218 S219 Q221 W244 G245 G247
Binding residue
(residue number reindexed from 1)
D188 S189 Q191 W214 G215 G217
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) H74 D121 Q221 G222 D223 S224
Catalytic site (residue number reindexed from 1) H44 D91 Q191 G192 D193 S194
Enzyme Commision number 3.4.21.59: tryptase.
Gene Ontology
Molecular Function
GO:0004252 serine-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function

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Biological Process
External links
PDB RCSB:6p0p, PDBe:6p0p, PDBj:6p0p
PDBsum6p0p
PubMed32057241
UniProtQ15661|TRYB1_HUMAN Tryptase alpha/beta-1 (Gene Name=TPSAB1)

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