Structure of PDB 6ojt Chain A Binding Site BS01

Receptor Information
>6ojt Chain A (length=481) Species: 13689 (Sphingomonas paucimobilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AHFPQTPGFSGTLRPLRIEGDILDIEIEGEVPPQLNGTFHRVHPDAQFPP
RFEDDQFFNGDGMVSLFRFHDGKIDFRQRYAQTDKWKVERKAGKSLFGAY
RNPLTDDASVQGMIRGTANTNVMVHAGKLYAMKEDSPCLIMDPLTLETEG
YTNFDGKLQSQTFCAHPKIDPVTGNLCAFAYGAKGLMTLDMAYIEISPTG
KLLKEIPFQNPYYCMMHDFGVTEDYAVFAVMPLLSSWDRLEQRLPFFGFD
TTLPCYLGILPRNGDARDLRWFKTGNCFVGHVMNAFNDGTKVHIDMPVSR
NNSFPFFDVHGAPFDPVAGQGFLTRWTVDMASNGDSFEKTERLFDRPDEF
PRIDERYATRAYRHGWMLILDTEKPYEAPGGAFYALTNTLGHIDLATGKS
SSWWAGPRCAIQEPCFIPRSPDAPEGDGYVIALVDDHVANYSDLAIFDAQ
HVDQGPIARAKLPVRIRQGLHGNWADASRLA
Ligand information
Ligand IDNSL
InChIInChI=1S/C12H10N2O/c15-12-8-6-11(7-9-12)14-13-10-4-2-1-3-5-10/h1-9,15H/b14-13+
InChIKeyBEYOBVMPDRKTNR-BUHFOSPRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1ccc(cc1)/N=N/c2ccc(cc2)O
OpenEye OEToolkits 2.0.7c1ccc(cc1)N=Nc2ccc(cc2)O
ACDLabs 12.01c1ccc(cc1)\N=N\c2ccc(O)cc2
CACTVS 3.385Oc1ccc(cc1)N=Nc2ccccc2
FormulaC12 H10 N2 O
Name4-Hydroxyazobenzene;
4-[(E)-phenyldiazenyl]phenol
ChEMBLCHEMBL79759
DrugBank
ZINCZINC000100010406
PDB chain6ojt Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6ojt Identification of functionally important residues and structural features in a bacterial lignostilbene dioxygenase.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		F59 Y101 K134 E135 H218 H282 F308
Binding residue
(residue number reindexed from 1)		F58 Y100 K133 E134 H217 H281 F307
Annotation score1
Enzymatic activity
Enzyme Commision number 1.13.11.43: lignostilbene alphabeta-dioxygenase.
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0010436 carotenoid dioxygenase activity
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872 metal ion binding
GO:0050054 lignostilbene alpha beta-dioxygenase activity
GO:0051213 dioxygenase activity
Biological Process
GO:0016121 carotene catabolic process
GO:0046274 lignin catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6ojt, PDBe:6ojt, PDBj:6ojt
PDBsum6ojt
PubMed31292192
UniProtQ53353|LSDX1_SPHPI Lignostilbene-alpha,beta-dioxygenase isozyme I

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