Structure of PDB 6ofr Chain A Binding Site BS01

Receptor Information
>6ofr Chain A (length=758) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDS
TQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSA
TNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNKVK
LGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPDFKKNFYTLSFNQEL
ADNFGVTAGLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFA
SDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAK
LRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDN
YTFKTRLDWQKFAVGNVSHQPYFGAEYIYSDAWTERHNQSESYVINAAGK
KTNHTIYHKGKGRLGIDNYTLYMADRISWRNVSLMPGVRYDYDNYLSNHN
ISPRFMTEWDIFANQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGN
KTLTRYQDLKTPYNDELAMGLQQKIGKNVIARANYVYREAHDQISKSSRT
DSATKTTITEYNNDGKTKTHSFSLSFELAEPLHIRQVDINPQIVFSYIKS
KGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFT
HQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSL
TWDTRLSWTPQFLQQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTF
WLDVSMKF
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6ofr Chain A Residue 808 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ofr Protease-associated import systems are widespread in Gram-negative bacteria.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		L478 Q539
Binding residue
(residue number reindexed from 1)		L446 Q507
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:1901678 iron coordination entity transport
Cellular Component
GO:0009279 cell outer membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6ofr, PDBe:6ofr, PDBj:6ofr
PDBsum6ofr
PubMed31613892
UniProtP31827|YDDB_ECOLI Uncharacterized protein YddB (Gene Name=yddB)

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