Structure of PDB 6ofq Chain A Binding Site BS01

Receptor Information

>6ofq Chain A (length=512) Species: 102617 (Helicobacter pylori SS1)

SVKEQKRFGGVLVFARGADGSSMDPALVTDGESYVATGNIYDTLVQFKYG
TTEIEPALATSWDISPDGLVYTFHLRKGVYFHQTKYWNKKVEFSAKDVLF
SFERQMDKAKRYYSPGAKSYKYWEGMGMSHIIKSIEALDDYTIRFTLNGP
EAPFLANLGMDFLSILSKDYADYLEQNNKKDELAKKPVGTGPFKFFLWNK
DEKIILLKNQDYWGPKAYLDKVVVRTIPNSSTRALALRTGEIMLMTGPNL
NEVEQLEKLPNIVVDKSAGLLASWLSLNTQKKYFNNPLVRLAINHAINVD
DYIKVIYEGFAQKMVNPFPPTIWGYNYNIKPYEYDLKKAKELLKQAGYPN
GFKTTIFTTSTRNPKGAVFIQASLAKIGIDVKIEVYEWGAYLKRTGLGEH
EMAFAGWMADIADPDNFLYTLWSKQAASAIPTQNGSFYKSDAFSDLLIKA
KRVSDQKEREALYLKAQEIIHKDAPYVPLAYPYSVVPHLSKVKGYKTTGV
SVNRFFKVYLEK

Ligand information

>6ofq Chain B (length=4) Species: 562 (Escherichia coli)

STSA

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6ofq Molecular Basis of Unexpected Specificity of ABC Transporter-Associated Substrate-Binding Protein DppA from Helicobacter pylori.
• Resolution: 1.45 Å
• Binding residue (original residue number in PDB): T66 D67 G68 Y159 W425 G443 W444 M445 D447
• Binding residue (residue number reindexed from 1): T29 D30 G31 Y122 W388 G406 W407 M408 D410

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Nov 25 15:16:01 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6ofq', asym_id = 'A', bs = 'BS01', title = 'Molecular Basis of Unexpected Specificity of ABC...te-Binding Protein DppA from Helicobacter pylori.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6ofq', asym_id='A', bs='BS01', title='Molecular Basis of Unexpected Specificity of ABC...te-Binding Protein DppA from Helicobacter pylori.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0043190,0055085', uniprot = '', pdbid = '6ofq', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0043190,0055085', uniprot='', pdbid='6ofq', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>