Structure of PDB 6nvp Chain A Binding Site BS01

Receptor Information
>6nvp Chain A (length=197) Species: 160488 (Pseudomonas putida KT2440) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NYQPIEHRGQALWLLADKAIYWPARRALLVADVHIGKAATTEATLARLDR
LLAEHDCEQLIILGDFLHARTARAPATLAKVEDWRKRHKNLKVVLIRGNH
DRNAGDPPASLDIQVVDEPWVLEPFALQHEPQPHGTHPVLAGHVHPVFVL
RLRLPCFVIDEQVSLLPAFGEFTGGWEITPASASRLYLAGAERVWPL
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain6nvp Chain A Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6nvp Activity and structure ofPseudomonas putidaMPE, a manganese-dependent single-strand DNA endonuclease encoded in a nucleic acid repair gene cluster.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		D33 H35 D78 H158
Binding residue
(residue number reindexed from 1)		D32 H34 D65 H145
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6nvp, PDBe:6nvp, PDBj:6nvp
PDBsum6nvp
PubMed30894417
UniProtQ88NV2

[Back to BioLiP]