Structure of PDB 6nut Chain A Binding Site BS01

Receptor Information
>6nut Chain A (length=379) Species: 128952 (Ebola virus - Mayinga, Zaire, 1976) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DYHKILTAGLSVQQGIVRQRVIPVYQVNNLEEICQLIIQAFEAGVDFQES
ADSFLLMLCLHHAYQGDYKLFLESGAVKYLEGHGFRFEVKKRDGVKRLEE
LLPGKNIKRTLAAMTTEANAGQFLSFASLFLPKLVVGEKACLEKVQRQIQ
VHAEQGLIQYPTAWQSVGHMMVIFRLMRTNFLIKFLLIHQGMHMVAGHDA
NDAVISNSVAQARFSGLLIVKTVLDHILQKTERGVRLHPLARTAKVKNEV
NSFKAALSSLAKHGEYAPFARLLNLSGVNNLEHGLFPQLSAIALGVATAH
GSTLAGVNVGEQYQQLREAATEAEKQLQQYAESRELDHLGLDDQEKKILM
NFHQKKNEISFQQTNAMVTLRKERLAKLT
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6nut Cryo-EM structure of the Ebola virus nucleoprotein-RNA complex.
Resolution3.1 Å
Binding residue
(original residue number in PDB)
K160 V162 V163 V178 E181 Q182 Q238 G243 L245 H310 T330 L331 G333 V334 N335 R401
Binding residue
(residue number reindexed from 1)
K133 V135 V136 V151 E154 Q155 Q211 G216 L218 H283 T303 L304 G306 V307 N308 R374
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0019074 viral RNA genome packaging
Cellular Component
GO:0019013 viral nucleocapsid

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6nut, PDBe:6nut, PDBj:6nut
PDBsum6nut
PubMed31045563
UniProtP18272|NCAP_EBOZM Nucleoprotein (Gene Name=NP)

[Back to BioLiP]