Structure of PDB 6ndy Chain A Binding Site BS01

Receptor Information
>6ndy Chain A (length=314) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKP
TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK
QLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGN
DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT
PCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSE
TRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNE
DDLLKQEQFTRDFG
Ligand information
>6ndy Chain G (length=20) Species: 32630 (synthetic construct) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
GGDEIVNKVLGGAAAAAAAA
Receptor-Ligand Complex Structure
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PDB6ndy Structure of Vps4 with circular peptides and implications for translocation of two polypeptide chains by AAA+ ATPases.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		K205 W206 M207 E245 E247
Binding residue
(residue number reindexed from 1)		K90 W91 M92 E130 E132
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:6ndy, PDBe:6ndy, PDBj:6ndy
PDBsum6ndy
PubMed31184588
UniProtP52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 (Gene Name=VPS4)

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